Gene : Glyma.01G207900 G. max Wm82.a2.v1
Defline:  (1 of 16) PF05703 - Auxin canalisation (Auxin_canalis) Genomic Order:  2079
Name:  ? Glyma.01G207900 Secondary Identifier:  ? PAC:30543498
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G207900 0.5kb upstream 0.5kb upstream 3416 true Chr01: 53980105-53983520 Glycine max
Glyma.01G207900 0.5kb upstream 0.5kb upstream 500 false Chr01: 53980105-53980604 Glycine max
Glyma.01G207900 0.5kb downstream 0.5kb downstream 3416 true Chr01: 53980605-53984020 Glycine max
Glyma.01G207900 0.5kb downstream 0.5kb downstream 500 false Chr01: 53983521-53984020 Glycine max
Glyma.01G207900 1.0kb upstream 1.0kb upstream 3916 true Chr01: 53979605-53983520 Glycine max
Glyma.01G207900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 53979605-53980604 Glycine max
Glyma.01G207900 1.0kb downstream 1.0kb downstream 3916 true Chr01: 53980605-53984520 Glycine max
Glyma.01G207900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 53983521-53984520 Glycine max
Glyma.01G207900 2.0kb upstream 2.0kb upstream 4916 true Chr01: 53978605-53983520 Glycine max
Glyma.01G207900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 53978605-53980604 Glycine max
Glyma.01G207900 2.0kb downstream 2.0kb downstream 4916 true Chr01: 53980605-53985520 Glycine max
Glyma.01G207900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 53983521-53985520 Glycine max
Glyma.01G207900 5.0kb upstream 5.0kb upstream 7916 true Chr01: 53975605-53983520 Glycine max
Glyma.01G207900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 53975605-53980604 Glycine max
Glyma.01G207900 5.0kb downstream 5.0kb downstream 7916 true Chr01: 53980605-53988520 Glycine max
Glyma.01G207900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 53983521-53988520 Glycine max
Glyma.01G207900 10.0kb upstream 10.0kb upstream 12916 true Chr01: 53970605-53983520 Glycine max
Glyma.01G207900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 53970605-53980604 Glycine max
Glyma.01G207900 10.0kb downstream 10.0kb downstream 12916 true Chr01: 53980605-53993520 Glycine max
Glyma.01G207900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 53983521-53993520 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301283 5265 Fabidae View MSA
124050253 5270 Rosid View MSA
123741992 5271 Pentapetalae View MSA
122794510 5272 Eudicot View MSA
122048590 5273 Angiosperm View MSA
121311030 5274 Embryophyte View MSA
123348384 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.230713 0.0 0.89156    
cufflinks 0.305593 0.0 1.16691    
cufflinks 1.18514 0.0 4.20753   High
cufflinks 0.888813 0.0 3.21525   High
cufflinks 0.226855 0.0 0.876383 Low  
cufflinks 0.0632435 0.0 0.256987 Low Low
cufflinks 0.149109 0.0 0.586173 Low  
cufflinks 0.636669 0.0 2.3501    
cufflinks 0.12464 0.0 0.493213 Low  
cufflinks 8.599     High High
cufflinks 1.841        
cufflinks 2.353       High
cufflinks 0.332       Low
cufflinks 0.248       Low
cufflinks 0.893        
cufflinks 0.701        
cufflinks 1.531        
cufflinks 2.247       High
cufflinks 0.53        
cufflinks 0.417        
cufflinks 0.764        
cufflinks 0.455        
cufflinks 0.435        
cufflinks 0.414        
cufflinks 0.638        
cufflinks 1.188        

0 Strain