Gene : Glyma.01G078200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31374:SF56 - AUXIN-REGULATED PROTEIN-RELATED Genomic Order:  782
Name:  ? Glyma.01G078200 Secondary Identifier:  ? PAC:30541847
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G078200 0.5kb upstream 0.5kb upstream 1683 true Chr01: 19949543-19951225 Glycine max
Glyma.01G078200 0.5kb upstream 0.5kb upstream 500 false Chr01: 19950726-19951225 Glycine max
Glyma.01G078200 0.5kb downstream 0.5kb downstream 1683 true Chr01: 19949043-19950725 Glycine max
Glyma.01G078200 0.5kb downstream 0.5kb downstream 500 false Chr01: 19949043-19949542 Glycine max
Glyma.01G078200 1.0kb upstream 1.0kb upstream 2183 true Chr01: 19949543-19951725 Glycine max
Glyma.01G078200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 19950726-19951725 Glycine max
Glyma.01G078200 1.0kb downstream 1.0kb downstream 2183 true Chr01: 19948543-19950725 Glycine max
Glyma.01G078200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 19948543-19949542 Glycine max
Glyma.01G078200 2.0kb upstream 2.0kb upstream 3183 true Chr01: 19949543-19952725 Glycine max
Glyma.01G078200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 19950726-19952725 Glycine max
Glyma.01G078200 2.0kb downstream 2.0kb downstream 3183 true Chr01: 19947543-19950725 Glycine max
Glyma.01G078200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 19947543-19949542 Glycine max
Glyma.01G078200 5.0kb upstream 5.0kb upstream 6183 true Chr01: 19949543-19955725 Glycine max
Glyma.01G078200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 19950726-19955725 Glycine max
Glyma.01G078200 5.0kb downstream 5.0kb downstream 6183 true Chr01: 19944543-19950725 Glycine max
Glyma.01G078200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 19944543-19949542 Glycine max
Glyma.01G078200 10.0kb upstream 10.0kb upstream 11183 true Chr01: 19949543-19960725 Glycine max
Glyma.01G078200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 19950726-19960725 Glycine max
Glyma.01G078200 10.0kb downstream 10.0kb downstream 11183 true Chr01: 19939543-19950725 Glycine max
Glyma.01G078200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 19939543-19949542 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301915 5265 Fabidae View MSA
124066518 5270 Rosid View MSA
123741344 5271 Pentapetalae View MSA
122791593 5272 Eudicot View MSA
122049926 5273 Angiosperm View MSA
121311651 5274 Embryophyte View MSA
123348921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.6393 0.0 44.9922   High
cufflinks 1.93347 0.0 6.7442    
cufflinks 24.466 0.0 65.4657 High High
cufflinks 3.57316 0.0 11.5888    
cufflinks 0.978495 0.0 3.5581    
cufflinks 6.39521 0.0 18.9699    
cufflinks 0.293866 0.0 1.13412   Low
cufflinks 1.31918 0.0 4.72981    
cufflinks 0.475422 0.0 1.79804   Low
cufflinks 6.532       High
cufflinks 0.373        
cufflinks 14.018     High High
cufflinks 1.46        
cufflinks 0.539        
cufflinks 0.175       Low
cufflinks 3.416        
cufflinks 1.823        
cufflinks 3.056        
cufflinks 1.668        
cufflinks 3.263        
cufflinks 0.11       Low
cufflinks 4.06        
cufflinks 3.375        
cufflinks 0.192       Low
cufflinks 4.348        
cufflinks 0.185       Low

0 Strain