Gene : Glyma.01G086900 G. max Wm82.a2.v1
Defline:  (1 of 6) PF06351 - Allene oxide cyclase (Allene_ox_cyc) Genomic Order:  869
Name:  ? Glyma.01G086900 Secondary Identifier:  ? PAC:30543218
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G086900 0.5kb upstream 0.5kb upstream 1768 true Chr01: 26202665-26204432 Glycine max
Glyma.01G086900 0.5kb upstream 0.5kb upstream 500 false Chr01: 26203933-26204432 Glycine max
Glyma.01G086900 0.5kb downstream 0.5kb downstream 1768 true Chr01: 26202165-26203932 Glycine max
Glyma.01G086900 0.5kb downstream 0.5kb downstream 500 false Chr01: 26202165-26202664 Glycine max
Glyma.01G086900 1.0kb upstream 1.0kb upstream 2268 true Chr01: 26202665-26204932 Glycine max
Glyma.01G086900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26203933-26204932 Glycine max
Glyma.01G086900 1.0kb downstream 1.0kb downstream 2268 true Chr01: 26201665-26203932 Glycine max
Glyma.01G086900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26201665-26202664 Glycine max
Glyma.01G086900 2.0kb upstream 2.0kb upstream 3268 true Chr01: 26202665-26205932 Glycine max
Glyma.01G086900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26203933-26205932 Glycine max
Glyma.01G086900 2.0kb downstream 2.0kb downstream 3268 true Chr01: 26200665-26203932 Glycine max
Glyma.01G086900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26200665-26202664 Glycine max
Glyma.01G086900 5.0kb upstream 5.0kb upstream 6268 true Chr01: 26202665-26208932 Glycine max
Glyma.01G086900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26203933-26208932 Glycine max
Glyma.01G086900 5.0kb downstream 5.0kb downstream 6268 true Chr01: 26197665-26203932 Glycine max
Glyma.01G086900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26197665-26202664 Glycine max
Glyma.01G086900 10.0kb upstream 10.0kb upstream 11268 true Chr01: 26202665-26213932 Glycine max
Glyma.01G086900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26203933-26213932 Glycine max
Glyma.01G086900 10.0kb downstream 10.0kb downstream 11268 true Chr01: 26192665-26203932 Glycine max
Glyma.01G086900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26192665-26202664 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305764 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.50547 0.0 11.5721    
cufflinks 4.45554 0.0 14.2109    
cufflinks 3.54497 0.0 11.6623    
cufflinks 2.72567 0.0 9.25589    
cufflinks 20.1515 0.0 54.3539 High High
cufflinks 7.53178 0.0 22.3084    
cufflinks 10.4166 0.0 29.6367    
cufflinks 1.55547 0.0 5.54357   Low
cufflinks 14.1554 0.0 39.0254   High
cufflinks 3.253        
cufflinks 11.13     High  
cufflinks 5.336        
cufflinks 17.699     High  
cufflinks 15.826     High  
cufflinks 16.64     High  
cufflinks 1.043       Low
cufflinks 82.679     High High
cufflinks 12.241     High  
cufflinks 4.569        
cufflinks 1.052       Low
cufflinks 9.527     High  
cufflinks 1.124       Low
cufflinks 3.098        
cufflinks 22.918     High  
cufflinks 1.014       Low
cufflinks 53.849     High High

0 Strain