Gene : Glyma.01G089300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31342:SF7 - PROTEIN CHUP1, CHLOROPLASTIC Genomic Order:  893
Name:  ? Glyma.01G089300 Secondary Identifier:  ? PAC:30545091
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G089300 0.5kb upstream 0.5kb upstream 9968 true Chr01: 27014318-27024285 Glycine max
Glyma.01G089300 0.5kb upstream 0.5kb upstream 500 false Chr01: 27023786-27024285 Glycine max
Glyma.01G089300 0.5kb downstream 0.5kb downstream 9968 true Chr01: 27013818-27023785 Glycine max
Glyma.01G089300 0.5kb downstream 0.5kb downstream 500 false Chr01: 27013818-27014317 Glycine max
Glyma.01G089300 1.0kb upstream 1.0kb upstream 10468 true Chr01: 27014318-27024785 Glycine max
Glyma.01G089300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 27023786-27024785 Glycine max
Glyma.01G089300 1.0kb downstream 1.0kb downstream 10468 true Chr01: 27013318-27023785 Glycine max
Glyma.01G089300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 27013318-27014317 Glycine max
Glyma.01G089300 2.0kb upstream 2.0kb upstream 11468 true Chr01: 27014318-27025785 Glycine max
Glyma.01G089300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 27023786-27025785 Glycine max
Glyma.01G089300 2.0kb downstream 2.0kb downstream 11468 true Chr01: 27012318-27023785 Glycine max
Glyma.01G089300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 27012318-27014317 Glycine max
Glyma.01G089300 5.0kb upstream 5.0kb upstream 14468 true Chr01: 27014318-27028785 Glycine max
Glyma.01G089300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 27023786-27028785 Glycine max
Glyma.01G089300 5.0kb downstream 5.0kb downstream 14468 true Chr01: 27009318-27023785 Glycine max
Glyma.01G089300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 27009318-27014317 Glycine max
Glyma.01G089300 10.0kb upstream 10.0kb upstream 19468 true Chr01: 27014318-27033785 Glycine max
Glyma.01G089300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 27023786-27033785 Glycine max
Glyma.01G089300 10.0kb downstream 10.0kb downstream 19468 true Chr01: 27004318-27023785 Glycine max
Glyma.01G089300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 27004318-27014317 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301701 5265 Fabidae View MSA
124062330 5270 Rosid View MSA
123739628 5271 Pentapetalae View MSA
122790649 5272 Eudicot View MSA
122047771 5273 Angiosperm View MSA
121348939 5274 Embryophyte View MSA
123381088 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.6358 0.0 173.706 High High
cufflinks 4.11157 0.0 12.6597    
cufflinks 5.46094 0.0 19.1426    
cufflinks 2.50733 0.0 9.76777    
cufflinks 0.101655 0.0 0.488367 Low Low
cufflinks 0.0828566 0.0 0.413441 Low Low
cufflinks 3.24063 0.0 12.0095    
cufflinks 1.34967 0.0 5.37607    
cufflinks 0.111705 0.0 0.543856 Low Low
cufflinks 0.292        
cufflinks 0.004     Low Low
cufflinks 0.954        
cufflinks 0.009     Low  
cufflinks 0.002     Low Low
cufflinks 0.004     Low Low
cufflinks 10.349     High High
cufflinks 0.021     Low  
cufflinks 1.248        
cufflinks 0.889        
cufflinks 13.838     High High
cufflinks 0.008     Low  
cufflinks 14.462     High High
cufflinks 7.574     High High
cufflinks 0.01     Low  
cufflinks 13.309     High High
cufflinks 0.009     Low  

0 Strain