Gene : Glyma.U007000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR15160:SF3 - BIFUNCTIONAL NUCLEASE 1-RELATED Genomic Order:  1
Name:  ? Glyma.U007000 Secondary Identifier:  ? PAC:30523541
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U007000 0.5kb upstream 0.5kb upstream 2792 true scaffold_1742: 111-2902 Glycine max
Glyma.U007000 0.5kb upstream 0.5kb upstream 500 false scaffold_1742: 2403-2902 Glycine max
Glyma.U007000 0.5kb downstream 0.5kb downstream 2402 true scaffold_1742: 1-2402 Glycine max
Glyma.U007000 0.5kb downstream 0.5kb downstream 110 false scaffold_1742: 1-110 Glycine max
Glyma.U007000 1.0kb upstream 1.0kb upstream 2794 true scaffold_1742: 111-2904 Glycine max
Glyma.U007000 1.0kb upstream 1.0kb upstream 502 false scaffold_1742: 2403-2904 Glycine max
Glyma.U007000 1.0kb downstream 1.0kb downstream 2402 true scaffold_1742: 1-2402 Glycine max
Glyma.U007000 1.0kb downstream 1.0kb downstream 110 false scaffold_1742: 1-110 Glycine max
Glyma.U007000 2.0kb upstream 2.0kb upstream 2794 true scaffold_1742: 111-2904 Glycine max
Glyma.U007000 2.0kb upstream 2.0kb upstream 502 false scaffold_1742: 2403-2904 Glycine max
Glyma.U007000 2.0kb downstream 2.0kb downstream 2402 true scaffold_1742: 1-2402 Glycine max
Glyma.U007000 2.0kb downstream 2.0kb downstream 110 false scaffold_1742: 1-110 Glycine max
Glyma.U007000 5.0kb upstream 5.0kb upstream 2794 true scaffold_1742: 111-2904 Glycine max
Glyma.U007000 5.0kb upstream 5.0kb upstream 502 false scaffold_1742: 2403-2904 Glycine max
Glyma.U007000 5.0kb downstream 5.0kb downstream 2402 true scaffold_1742: 1-2402 Glycine max
Glyma.U007000 5.0kb downstream 5.0kb downstream 110 false scaffold_1742: 1-110 Glycine max
Glyma.U007000 10.0kb upstream 10.0kb upstream 2794 true scaffold_1742: 111-2904 Glycine max
Glyma.U007000 10.0kb upstream 10.0kb upstream 502 false scaffold_1742: 2403-2904 Glycine max
Glyma.U007000 10.0kb downstream 10.0kb downstream 2402 true scaffold_1742: 1-2402 Glycine max
Glyma.U007000 10.0kb downstream 10.0kb downstream 110 false scaffold_1742: 1-110 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237835 5265 Fabidae Singleton cluster - no MSA
123983346 5270 Rosid Singleton cluster - no MSA
123751879 5271 Pentapetalae View MSA
122794039 5272 Eudicot View MSA
122042536 5273 Angiosperm View MSA
121348555 5274 Embryophyte View MSA
123425976 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.663 0.0 116.593 High High
cufflinks 19.014 0.0 51.9444    
cufflinks 59.2509 0.0 159.924 High High
cufflinks 14.7605 0.0 41.1429    
cufflinks 8.06425 0.0 24.2213   Low
cufflinks 18.9532 0.0 51.8147    
cufflinks 12.0687 0.0 34.4909    
cufflinks 15.9997 0.0 44.277    
cufflinks 13.4896 0.0 37.9375    
cufflinks 2.623        
cufflinks 6.15     High  
cufflinks 13.422     High  
cufflinks 1.68       Low
cufflinks 1.185       Low
cufflinks 3.82        
cufflinks 15.68     High  
cufflinks 1.767       Low
cufflinks 10.928     High  
cufflinks 5.295        
cufflinks 33.495     High High
cufflinks 5.375        
cufflinks 24.914     High High
cufflinks 7.287        
cufflinks 7.666     High  
cufflinks 25.501     High High
cufflinks 5.006        

0 Strain