Gene : Glyma.01G028300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11850//PTHR11850:SF101 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS Genomic Order:  283
Name:  ? Glyma.01G028300 Secondary Identifier:  ? PAC:30543774
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G028300 0.5kb upstream 0.5kb upstream 9271 true Chr01: 2948608-2957878 Glycine max
Glyma.01G028300 0.5kb upstream 0.5kb upstream 500 false Chr01: 2957379-2957878 Glycine max
Glyma.01G028300 0.5kb downstream 0.5kb downstream 9271 true Chr01: 2948108-2957378 Glycine max
Glyma.01G028300 0.5kb downstream 0.5kb downstream 500 false Chr01: 2948108-2948607 Glycine max
Glyma.01G028300 1.0kb upstream 1.0kb upstream 9771 true Chr01: 2948608-2958378 Glycine max
Glyma.01G028300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2957379-2958378 Glycine max
Glyma.01G028300 1.0kb downstream 1.0kb downstream 9771 true Chr01: 2947608-2957378 Glycine max
Glyma.01G028300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2947608-2948607 Glycine max
Glyma.01G028300 2.0kb upstream 2.0kb upstream 10771 true Chr01: 2948608-2959378 Glycine max
Glyma.01G028300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2957379-2959378 Glycine max
Glyma.01G028300 2.0kb downstream 2.0kb downstream 10771 true Chr01: 2946608-2957378 Glycine max
Glyma.01G028300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2946608-2948607 Glycine max
Glyma.01G028300 5.0kb upstream 5.0kb upstream 13771 true Chr01: 2948608-2962378 Glycine max
Glyma.01G028300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2957379-2962378 Glycine max
Glyma.01G028300 5.0kb downstream 5.0kb downstream 13771 true Chr01: 2943608-2957378 Glycine max
Glyma.01G028300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2943608-2948607 Glycine max
Glyma.01G028300 10.0kb upstream 10.0kb upstream 18771 true Chr01: 2948608-2967378 Glycine max
Glyma.01G028300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2957379-2967378 Glycine max
Glyma.01G028300 10.0kb downstream 10.0kb downstream 18771 true Chr01: 2938608-2957378 Glycine max
Glyma.01G028300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2938608-2948607 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310769 5265 Fabidae View MSA
124071044 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0161041 0.0 0.0728311 Low Low
cufflinks 1.26771 0.0 4.50327    
cufflinks 0.760575 0.0 2.79581    
cufflinks 0.24919 0.0 0.963144    
cufflinks 3.03821 0.0 9.74461    
cufflinks 1.16752 0.0 4.16414    
cufflinks 0.170347 0.0 0.668263 Low  
cufflinks 7.69069 0.0 21.8526   High
cufflinks 1.05812 0.0 3.79977    
cufflinks 0.883       High
cufflinks 0.041     Low  
cufflinks 0.186        
cufflinks 0.11        
cufflinks 0.399       High
cufflinks 0.002     Low Low
cufflinks 0.008     Low Low
cufflinks 0.118        
cufflinks 0.268        
cufflinks 0.192        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.121        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.105        
cufflinks 0.006     Low Low
cufflinks 0.059     Low  

0 Strain