Gene : Glyma.01G045400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12300:SF51 - HVA22-LIKE PROTEIN C Genomic Order:  454
Name:  ? Glyma.01G045400 Secondary Identifier:  ? PAC:30542822
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G045400 0.5kb upstream 0.5kb upstream 3864 true Chr01: 5140834-5144697 Glycine max
Glyma.01G045400 0.5kb upstream 0.5kb upstream 500 false Chr01: 5144198-5144697 Glycine max
Glyma.01G045400 0.5kb downstream 0.5kb downstream 3864 true Chr01: 5140334-5144197 Glycine max
Glyma.01G045400 0.5kb downstream 0.5kb downstream 500 false Chr01: 5140334-5140833 Glycine max
Glyma.01G045400 1.0kb upstream 1.0kb upstream 4364 true Chr01: 5140834-5145197 Glycine max
Glyma.01G045400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5144198-5145197 Glycine max
Glyma.01G045400 1.0kb downstream 1.0kb downstream 4364 true Chr01: 5139834-5144197 Glycine max
Glyma.01G045400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5139834-5140833 Glycine max
Glyma.01G045400 2.0kb upstream 2.0kb upstream 5364 true Chr01: 5140834-5146197 Glycine max
Glyma.01G045400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5144198-5146197 Glycine max
Glyma.01G045400 2.0kb downstream 2.0kb downstream 5364 true Chr01: 5138834-5144197 Glycine max
Glyma.01G045400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5138834-5140833 Glycine max
Glyma.01G045400 5.0kb upstream 5.0kb upstream 8364 true Chr01: 5140834-5149197 Glycine max
Glyma.01G045400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5144198-5149197 Glycine max
Glyma.01G045400 5.0kb downstream 5.0kb downstream 8364 true Chr01: 5135834-5144197 Glycine max
Glyma.01G045400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5135834-5140833 Glycine max
Glyma.01G045400 10.0kb upstream 10.0kb upstream 13364 true Chr01: 5140834-5154197 Glycine max
Glyma.01G045400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5144198-5154197 Glycine max
Glyma.01G045400 10.0kb downstream 10.0kb downstream 13364 true Chr01: 5130834-5144197 Glycine max
Glyma.01G045400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5130834-5140833 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311080 5265 Fabidae View MSA
124069874 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.266798 0.0 1.03861   Low
cufflinks 17.4742 0.0 62.987   High
cufflinks 2.64851 0.0 13.3823    
cufflinks 4.11396 0.0 20.2813    
cufflinks 3.48711 0.0 12.6628    
cufflinks 4.26669 0.0 14.3446    
cufflinks 1.41437 0.0 6.20013    
cufflinks 8.89946 0.0 37.3645    
cufflinks 2.85927 0.0 10.6916    
cufflinks 2.812       High
cufflinks 0.072       Low
cufflinks 0.859        
cufflinks 0.738        
cufflinks 0.75        
cufflinks 0.043     Low Low
cufflinks 1.209        
cufflinks 0.179        
cufflinks 0.668        
cufflinks 2.144       High
cufflinks 0.364        
cufflinks 0.136        
cufflinks 0.459        
cufflinks 0.654        
cufflinks 0.062       Low
cufflinks 0.555        
cufflinks 0.24        

0 Strain