Gene : Glyma.01G052800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED Genomic Order:  528
Name:  ? Glyma.01G052800 Secondary Identifier:  ? PAC:30542109
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G052800 0.5kb upstream 0.5kb upstream 5210 true Chr01: 6451907-6457116 Glycine max
Glyma.01G052800 0.5kb upstream 0.5kb upstream 500 false Chr01: 6456617-6457116 Glycine max
Glyma.01G052800 0.5kb downstream 0.5kb downstream 5210 true Chr01: 6451407-6456616 Glycine max
Glyma.01G052800 0.5kb downstream 0.5kb downstream 500 false Chr01: 6451407-6451906 Glycine max
Glyma.01G052800 1.0kb upstream 1.0kb upstream 5710 true Chr01: 6451907-6457616 Glycine max
Glyma.01G052800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6456617-6457616 Glycine max
Glyma.01G052800 1.0kb downstream 1.0kb downstream 5710 true Chr01: 6450907-6456616 Glycine max
Glyma.01G052800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6450907-6451906 Glycine max
Glyma.01G052800 2.0kb upstream 2.0kb upstream 6710 true Chr01: 6451907-6458616 Glycine max
Glyma.01G052800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6456617-6458616 Glycine max
Glyma.01G052800 2.0kb downstream 2.0kb downstream 6710 true Chr01: 6449907-6456616 Glycine max
Glyma.01G052800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6449907-6451906 Glycine max
Glyma.01G052800 5.0kb upstream 5.0kb upstream 9710 true Chr01: 6451907-6461616 Glycine max
Glyma.01G052800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6456617-6461616 Glycine max
Glyma.01G052800 5.0kb downstream 5.0kb downstream 9710 true Chr01: 6446907-6456616 Glycine max
Glyma.01G052800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6446907-6451906 Glycine max
Glyma.01G052800 10.0kb upstream 10.0kb upstream 14710 true Chr01: 6451907-6466616 Glycine max
Glyma.01G052800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6456617-6466616 Glycine max
Glyma.01G052800 10.0kb downstream 10.0kb downstream 14710 true Chr01: 6441907-6456616 Glycine max
Glyma.01G052800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6441907-6451906 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300139 5265 Fabidae View MSA
124061213 5270 Rosid View MSA
123741301 5271 Pentapetalae View MSA
122797628 5272 Eudicot View MSA
122045061 5273 Angiosperm View MSA
121345053 5274 Embryophyte View MSA
123428626 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.164 0.0 45.1605    
cufflinks 13.056 0.0 49.2832    
cufflinks 9.31693 0.0 38.1626    
cufflinks 10.6544 0.0 42.7687    
cufflinks 11.0394 0.0 43.946    
cufflinks 23.4709 0.0 83.3578 High High
cufflinks 10.2353 0.0 41.2469    
cufflinks 15.0586 0.0 55.0599    
cufflinks 9.62667 0.0 40.3061    
cufflinks 1.6        
cufflinks 1.094        
cufflinks 1.008       Low
cufflinks 1.516        
cufflinks 1.483        
cufflinks 0.951       Low
cufflinks 1.735       High
cufflinks 0.903       Low
cufflinks 1.267        
cufflinks 1.359        
cufflinks 1.814       High
cufflinks 1.204        
cufflinks 1.702       High
cufflinks 1.265        
cufflinks 1.318        
cufflinks 1.916       High
cufflinks 1.17        

0 Strain