Gene : Glyma.01G054500 G. max Wm82.a2.v1
Defline:  (1 of 10) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  545
Name:  ? Glyma.01G054500 Secondary Identifier:  ? PAC:30544848
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3461 Glycine max pathologic  
Gmax PWY-3462 Glycine max pathologic  
Gmax PWY-3481 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G054500 0.5kb upstream 0.5kb upstream 6099 true Chr01: 7017265-7023363 Glycine max
Glyma.01G054500 0.5kb upstream 0.5kb upstream 500 false Chr01: 7022864-7023363 Glycine max
Glyma.01G054500 0.5kb downstream 0.5kb downstream 6099 true Chr01: 7016765-7022863 Glycine max
Glyma.01G054500 0.5kb downstream 0.5kb downstream 500 false Chr01: 7016765-7017264 Glycine max
Glyma.01G054500 1.0kb upstream 1.0kb upstream 6599 true Chr01: 7017265-7023863 Glycine max
Glyma.01G054500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7022864-7023863 Glycine max
Glyma.01G054500 1.0kb downstream 1.0kb downstream 6599 true Chr01: 7016265-7022863 Glycine max
Glyma.01G054500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7016265-7017264 Glycine max
Glyma.01G054500 2.0kb upstream 2.0kb upstream 7599 true Chr01: 7017265-7024863 Glycine max
Glyma.01G054500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7022864-7024863 Glycine max
Glyma.01G054500 2.0kb downstream 2.0kb downstream 7599 true Chr01: 7015265-7022863 Glycine max
Glyma.01G054500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7015265-7017264 Glycine max
Glyma.01G054500 5.0kb upstream 5.0kb upstream 10599 true Chr01: 7017265-7027863 Glycine max
Glyma.01G054500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7022864-7027863 Glycine max
Glyma.01G054500 5.0kb downstream 5.0kb downstream 10599 true Chr01: 7012265-7022863 Glycine max
Glyma.01G054500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7012265-7017264 Glycine max
Glyma.01G054500 10.0kb upstream 10.0kb upstream 15599 true Chr01: 7017265-7032863 Glycine max
Glyma.01G054500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7022864-7032863 Glycine max
Glyma.01G054500 10.0kb downstream 10.0kb downstream 15599 true Chr01: 7007265-7022863 Glycine max
Glyma.01G054500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7007265-7017264 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122309735 5265 Fabidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.129246 0.0 0.896466 Low Low
cufflinks 1.96645 0.0 17.1136    
cufflinks 0.41126 0.0 2.94223    
cufflinks 0.46002 0.0 5.96868    
cufflinks 3.13533 0.0 21.7735   High
cufflinks 1.2658 0.0 7.03619    
cufflinks 2.28954 0.0 19.1039    
cufflinks 1.21475 0.0 11.3074    
cufflinks 1.19011 0.0 14.3299    
cufflinks 0.041     Low  
cufflinks 0.039     Low  
cufflinks 0.028     Low  
cufflinks 0.17       High
cufflinks 0.189       High
cufflinks 0.02     Low  
cufflinks 0.01     Low  
cufflinks 0.016     Low  
cufflinks 0.039     Low  
cufflinks 0.104       High
cufflinks 0.003     Low Low
cufflinks 0.04     Low  
cufflinks 0.004     Low Low
cufflinks 0.007     Low  
cufflinks 0.02     Low  
cufflinks 0.004     Low Low
cufflinks 0.046     Low  

0 Strain