Gene : Glyma.01G042300 G. max Wm82.a2.v1
Defline:  (1 of 17) PF13426 - PAS domain (PAS_9) Genomic Order:  423
Name:  ? Glyma.01G042300 Secondary Identifier:  ? PAC:30542005
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G042300 0.5kb upstream 0.5kb upstream 5391 true Chr01: 4613542-4618932 Glycine max
Glyma.01G042300 0.5kb upstream 0.5kb upstream 500 false Chr01: 4618433-4618932 Glycine max
Glyma.01G042300 0.5kb downstream 0.5kb downstream 5391 true Chr01: 4613042-4618432 Glycine max
Glyma.01G042300 0.5kb downstream 0.5kb downstream 500 false Chr01: 4613042-4613541 Glycine max
Glyma.01G042300 1.0kb upstream 1.0kb upstream 5891 true Chr01: 4613542-4619432 Glycine max
Glyma.01G042300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4618433-4619432 Glycine max
Glyma.01G042300 1.0kb downstream 1.0kb downstream 5891 true Chr01: 4612542-4618432 Glycine max
Glyma.01G042300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4612542-4613541 Glycine max
Glyma.01G042300 2.0kb upstream 2.0kb upstream 6891 true Chr01: 4613542-4620432 Glycine max
Glyma.01G042300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4618433-4620432 Glycine max
Glyma.01G042300 2.0kb downstream 2.0kb downstream 6891 true Chr01: 4611542-4618432 Glycine max
Glyma.01G042300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4611542-4613541 Glycine max
Glyma.01G042300 5.0kb upstream 5.0kb upstream 9891 true Chr01: 4613542-4623432 Glycine max
Glyma.01G042300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4618433-4623432 Glycine max
Glyma.01G042300 5.0kb downstream 5.0kb downstream 9891 true Chr01: 4608542-4618432 Glycine max
Glyma.01G042300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4608542-4613541 Glycine max
Glyma.01G042300 10.0kb upstream 10.0kb upstream 14891 true Chr01: 4613542-4628432 Glycine max
Glyma.01G042300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4618433-4628432 Glycine max
Glyma.01G042300 10.0kb downstream 10.0kb downstream 14891 true Chr01: 4603542-4618432 Glycine max
Glyma.01G042300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4603542-4613541 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305323 5265 Fabidae View MSA
124063495 5270 Rosid View MSA
123740097 5271 Pentapetalae View MSA
122769970 5272 Eudicot View MSA
122045856 5273 Angiosperm View MSA
121348460 5274 Embryophyte View MSA
123424929 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.7857 0.0 168.298 High High
cufflinks 6.44133 0.0 30.2866    
cufflinks 16.8816 0.0 74.3389    
cufflinks 11.8993 0.0 53.6843    
cufflinks 3.4241 0.0 17.9122    
cufflinks 2.95659 0.0 12.1037   Low
cufflinks 2.76618 0.0 13.8775   Low
cufflinks 7.68877 0.0 37.1965    
cufflinks 6.68366 0.0 30.8317    
cufflinks 0.394        
cufflinks 2.328        
cufflinks 1.246        
cufflinks 0.203       Low
cufflinks 0.17       Low
cufflinks 4.238       High
cufflinks 1.788        
cufflinks 0.113       Low
cufflinks 0.882        
cufflinks 0.772        
cufflinks 2.41        
cufflinks 1.494        
cufflinks 1.572        
cufflinks 1.041        
cufflinks 1.742        
cufflinks 2.666       High
cufflinks 0.413        

0 Strain