Gene : Glyma.18G262700 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11993:SF27 - NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC Genomic Order:  2627
Name:  ? Glyma.18G262700 Secondary Identifier:  ? PAC:30558136
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3781 Glycine max pathologic  
Gmax PWY-4302 Glycine max pathologic  
Gmax PWY-5083 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G262700 0.5kb upstream 0.5kb upstream 1388 true Chr18: 54830831-54832218 Glycine max
Glyma.18G262700 0.5kb upstream 0.5kb upstream 500 false Chr18: 54831719-54832218 Glycine max
Glyma.18G262700 0.5kb downstream 0.5kb downstream 1388 true Chr18: 54830331-54831718 Glycine max
Glyma.18G262700 0.5kb downstream 0.5kb downstream 500 false Chr18: 54830331-54830830 Glycine max
Glyma.18G262700 1.0kb upstream 1.0kb upstream 1888 true Chr18: 54830831-54832718 Glycine max
Glyma.18G262700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 54831719-54832718 Glycine max
Glyma.18G262700 1.0kb downstream 1.0kb downstream 1888 true Chr18: 54829831-54831718 Glycine max
Glyma.18G262700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 54829831-54830830 Glycine max
Glyma.18G262700 2.0kb upstream 2.0kb upstream 2888 true Chr18: 54830831-54833718 Glycine max
Glyma.18G262700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 54831719-54833718 Glycine max
Glyma.18G262700 2.0kb downstream 2.0kb downstream 2888 true Chr18: 54828831-54831718 Glycine max
Glyma.18G262700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 54828831-54830830 Glycine max
Glyma.18G262700 5.0kb upstream 5.0kb upstream 5888 true Chr18: 54830831-54836718 Glycine max
Glyma.18G262700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 54831719-54836718 Glycine max
Glyma.18G262700 5.0kb downstream 5.0kb downstream 5888 true Chr18: 54825831-54831718 Glycine max
Glyma.18G262700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 54825831-54830830 Glycine max
Glyma.18G262700 10.0kb upstream 10.0kb upstream 10888 true Chr18: 54830831-54841718 Glycine max
Glyma.18G262700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 54831719-54841718 Glycine max
Glyma.18G262700 10.0kb downstream 10.0kb downstream 10888 true Chr18: 54820831-54831718 Glycine max
Glyma.18G262700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 54820831-54830830 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779393 5273 Angiosperm View MSA
122242262 5265 Fabidae Singleton cluster - no MSA
123986982 5270 Rosid Singleton cluster - no MSA
123742647 5271 Pentapetalae View MSA
122770338 5272 Eudicot View MSA
121350081 5274 Embryophyte View MSA
123381572 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.950166 0.0 3.80382    
cufflinks 0.458618 0.0 1.9018    
cufflinks 0.0923118 0.0 0.43675 Low Low
cufflinks 21.474 0.0 71.7401 High High
cufflinks 0.498252 0.0 2.04741    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 17.2501 0.0 59.1719   High
cufflinks 0.297015 0.0 1.26653    
cufflinks 0.450293 0.0 1.86396    
cufflinks 0.05     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.035     Low  
cufflinks 0.103        
cufflinks 0.023     Low Low
cufflinks 0.081     Low  
cufflinks 0.073        
cufflinks 0.024     Low Low
cufflinks 0.018     Low Low
cufflinks 0.101        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.043     Low  
cufflinks 0.182       High
cufflinks 0.022     Low Low
cufflinks 0.139       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain