Gene : Glyma.01G155000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR24015:SF562 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1550
Name:  ? Glyma.01G155000 Secondary Identifier:  ? PAC:30544712
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G155000 0.5kb upstream 0.5kb upstream 2219 true Chr01: 49253634-49255852 Glycine max
Glyma.01G155000 0.5kb upstream 0.5kb upstream 500 false Chr01: 49255353-49255852 Glycine max
Glyma.01G155000 0.5kb downstream 0.5kb downstream 2219 true Chr01: 49253134-49255352 Glycine max
Glyma.01G155000 0.5kb downstream 0.5kb downstream 500 false Chr01: 49253134-49253633 Glycine max
Glyma.01G155000 1.0kb upstream 1.0kb upstream 2719 true Chr01: 49253634-49256352 Glycine max
Glyma.01G155000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49255353-49256352 Glycine max
Glyma.01G155000 1.0kb downstream 1.0kb downstream 2719 true Chr01: 49252634-49255352 Glycine max
Glyma.01G155000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49252634-49253633 Glycine max
Glyma.01G155000 2.0kb upstream 2.0kb upstream 3719 true Chr01: 49253634-49257352 Glycine max
Glyma.01G155000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49255353-49257352 Glycine max
Glyma.01G155000 2.0kb downstream 2.0kb downstream 3719 true Chr01: 49251634-49255352 Glycine max
Glyma.01G155000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49251634-49253633 Glycine max
Glyma.01G155000 5.0kb upstream 5.0kb upstream 6719 true Chr01: 49253634-49260352 Glycine max
Glyma.01G155000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49255353-49260352 Glycine max
Glyma.01G155000 5.0kb downstream 5.0kb downstream 6719 true Chr01: 49248634-49255352 Glycine max
Glyma.01G155000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49248634-49253633 Glycine max
Glyma.01G155000 10.0kb upstream 10.0kb upstream 11719 true Chr01: 49253634-49265352 Glycine max
Glyma.01G155000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49255353-49265352 Glycine max
Glyma.01G155000 10.0kb downstream 10.0kb downstream 11719 true Chr01: 49243634-49255352 Glycine max
Glyma.01G155000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49243634-49253633 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314251 5265 Fabidae View MSA
124050221 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.18508 0.0 9.82666   High
cufflinks 1.07427 0.0 3.78425    
cufflinks 1.18102 0.0 4.12132    
cufflinks 1.16727 0.0 4.07897    
cufflinks 0.746429 0.0 2.69665    
cufflinks 0.161396 0.0 0.627929 Low Low
cufflinks 1.28681 0.0 4.45647    
cufflinks 0.881477 0.0 3.14775    
cufflinks 1.02957 0.0 3.6355    
cufflinks 0.328       Low
cufflinks 0.385       Low
cufflinks 1.32       High
cufflinks 0.282       Low
cufflinks 0.45        
cufflinks 0.729        
cufflinks 0.84        
cufflinks 0.703        
cufflinks 1.053        
cufflinks 0.904        
cufflinks 1.04        
cufflinks 0.609        
cufflinks 0.889        
cufflinks 1.044        
cufflinks 0.436        
cufflinks 0.914        
cufflinks 0.331       Low

0 Strain