Gene : Glyma.01G153500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  1535
Name:  ? Glyma.01G153500 Secondary Identifier:  ? PAC:30543885
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G153500 0.5kb upstream 0.5kb upstream 1294 true Chr01: 49096486-49097779 Glycine max
Glyma.01G153500 0.5kb upstream 0.5kb upstream 500 false Chr01: 49097280-49097779 Glycine max
Glyma.01G153500 0.5kb downstream 0.5kb downstream 1294 true Chr01: 49095986-49097279 Glycine max
Glyma.01G153500 0.5kb downstream 0.5kb downstream 500 false Chr01: 49095986-49096485 Glycine max
Glyma.01G153500 1.0kb upstream 1.0kb upstream 1794 true Chr01: 49096486-49098279 Glycine max
Glyma.01G153500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 49097280-49098279 Glycine max
Glyma.01G153500 1.0kb downstream 1.0kb downstream 1794 true Chr01: 49095486-49097279 Glycine max
Glyma.01G153500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 49095486-49096485 Glycine max
Glyma.01G153500 2.0kb upstream 2.0kb upstream 2794 true Chr01: 49096486-49099279 Glycine max
Glyma.01G153500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 49097280-49099279 Glycine max
Glyma.01G153500 2.0kb downstream 2.0kb downstream 2794 true Chr01: 49094486-49097279 Glycine max
Glyma.01G153500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 49094486-49096485 Glycine max
Glyma.01G153500 5.0kb upstream 5.0kb upstream 5794 true Chr01: 49096486-49102279 Glycine max
Glyma.01G153500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 49097280-49102279 Glycine max
Glyma.01G153500 5.0kb downstream 5.0kb downstream 5794 true Chr01: 49091486-49097279 Glycine max
Glyma.01G153500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 49091486-49096485 Glycine max
Glyma.01G153500 10.0kb upstream 10.0kb upstream 10794 true Chr01: 49096486-49107279 Glycine max
Glyma.01G153500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 49097280-49107279 Glycine max
Glyma.01G153500 10.0kb downstream 10.0kb downstream 10794 true Chr01: 49086486-49097279 Glycine max
Glyma.01G153500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49086486-49096485 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298276 5265 Fabidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.92802 0.0 13.9311   High
cufflinks 1.33451 0.0 5.02804    
cufflinks 0.507107 0.0 1.98752    
cufflinks 7.88796 0.0 25.984   High
cufflinks 0.207811 0.0 0.844203 Low Low
cufflinks 0.179112 0.0 0.732305 Low Low
cufflinks 2.25708 0.0 8.29147    
cufflinks 0.943757 0.0 3.61345    
cufflinks 0.287762 0.0 1.15205    
cufflinks 5.126        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.266        
cufflinks 0.041     Low Low
cufflinks 0.198        
cufflinks 0.024     Low Low
cufflinks 5.33        
cufflinks 0.256        
cufflinks 1.212        
cufflinks 3.674        
cufflinks 6.789        
cufflinks 0.062     Low  
cufflinks 7.196     High  
cufflinks 11.651     High High
cufflinks 0.023     Low Low
cufflinks 7.301     High High
cufflinks 0.018     Low Low

0 Strain