Gene : Glyma.01G162000 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG0107//KOG0121 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) Genomic Order:  1620
Name:  ? Glyma.01G162000 Secondary Identifier:  ? PAC:30542985
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G162000 0.5kb upstream 0.5kb upstream 3624 true Chr01: 50005834-50009457 Glycine max
Glyma.01G162000 0.5kb upstream 0.5kb upstream 500 false Chr01: 50008958-50009457 Glycine max
Glyma.01G162000 0.5kb downstream 0.5kb downstream 3624 true Chr01: 50005334-50008957 Glycine max
Glyma.01G162000 0.5kb downstream 0.5kb downstream 500 false Chr01: 50005334-50005833 Glycine max
Glyma.01G162000 1.0kb upstream 1.0kb upstream 4124 true Chr01: 50005834-50009957 Glycine max
Glyma.01G162000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50008958-50009957 Glycine max
Glyma.01G162000 1.0kb downstream 1.0kb downstream 4124 true Chr01: 50004834-50008957 Glycine max
Glyma.01G162000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50004834-50005833 Glycine max
Glyma.01G162000 2.0kb upstream 2.0kb upstream 5124 true Chr01: 50005834-50010957 Glycine max
Glyma.01G162000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50008958-50010957 Glycine max
Glyma.01G162000 2.0kb downstream 2.0kb downstream 5124 true Chr01: 50003834-50008957 Glycine max
Glyma.01G162000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50003834-50005833 Glycine max
Glyma.01G162000 5.0kb upstream 5.0kb upstream 8124 true Chr01: 50005834-50013957 Glycine max
Glyma.01G162000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50008958-50013957 Glycine max
Glyma.01G162000 5.0kb downstream 5.0kb downstream 8124 true Chr01: 50000834-50008957 Glycine max
Glyma.01G162000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50000834-50005833 Glycine max
Glyma.01G162000 10.0kb upstream 10.0kb upstream 13124 true Chr01: 50005834-50018957 Glycine max
Glyma.01G162000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50008958-50018957 Glycine max
Glyma.01G162000 10.0kb downstream 10.0kb downstream 13124 true Chr01: 49995834-50008957 Glycine max
Glyma.01G162000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 49995834-50005833 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309837 5265 Fabidae View MSA
124070278 5270 Rosid View MSA
123749009 5271 Pentapetalae View MSA
122794925 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.6522 0.0 65.8433 High  
cufflinks 20.9916 0.0 56.274 High Low
cufflinks 30.6975 0.0 81.9372 High  
cufflinks 22.2962 0.0 59.6568 High  
cufflinks 31.0321 0.0 82.8262 High  
cufflinks 42.8476 0.0 115.248 High High
cufflinks 22.3563 0.0 59.8129 High  
cufflinks 24.9005 0.0 66.4911 High  
cufflinks 30.5053 0.0 81.4042 High  
cufflinks 9.694     High  
cufflinks 13.228     High  
cufflinks 12.03     High  
cufflinks 14.752     High  
cufflinks 17.755     High High
cufflinks 10.072     High  
cufflinks 10.771     High  
cufflinks 8.479     High Low
cufflinks 15.449     High High
cufflinks 9.922     High  
cufflinks 10.413     High  
cufflinks 15.613     High High
cufflinks 9.713     High  
cufflinks 7.585     High Low
cufflinks 13.706     High  
cufflinks 9.637     High  
cufflinks 13.886     High  

0 Strain