Gene : Glyma.01G174900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11618//PTHR11618:SF26 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED Genomic Order:  1749
Name:  ? Glyma.01G174900 Secondary Identifier:  ? PAC:30542091
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G174900 0.5kb upstream 0.5kb upstream 2871 true Chr01: 51146109-51148979 Glycine max
Glyma.01G174900 0.5kb upstream 0.5kb upstream 500 false Chr01: 51146109-51146608 Glycine max
Glyma.01G174900 0.5kb downstream 0.5kb downstream 2871 true Chr01: 51146609-51149479 Glycine max
Glyma.01G174900 0.5kb downstream 0.5kb downstream 500 false Chr01: 51148980-51149479 Glycine max
Glyma.01G174900 1.0kb upstream 1.0kb upstream 3371 true Chr01: 51145609-51148979 Glycine max
Glyma.01G174900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51145609-51146608 Glycine max
Glyma.01G174900 1.0kb downstream 1.0kb downstream 3371 true Chr01: 51146609-51149979 Glycine max
Glyma.01G174900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51148980-51149979 Glycine max
Glyma.01G174900 2.0kb upstream 2.0kb upstream 4371 true Chr01: 51144609-51148979 Glycine max
Glyma.01G174900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51144609-51146608 Glycine max
Glyma.01G174900 2.0kb downstream 2.0kb downstream 4371 true Chr01: 51146609-51150979 Glycine max
Glyma.01G174900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51148980-51150979 Glycine max
Glyma.01G174900 5.0kb upstream 5.0kb upstream 7371 true Chr01: 51141609-51148979 Glycine max
Glyma.01G174900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51141609-51146608 Glycine max
Glyma.01G174900 5.0kb downstream 5.0kb downstream 7371 true Chr01: 51146609-51153979 Glycine max
Glyma.01G174900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51148980-51153979 Glycine max
Glyma.01G174900 10.0kb upstream 10.0kb upstream 12371 true Chr01: 51136609-51148979 Glycine max
Glyma.01G174900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51136609-51146608 Glycine max
Glyma.01G174900 10.0kb downstream 10.0kb downstream 12371 true Chr01: 51146609-51158979 Glycine max
Glyma.01G174900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51148980-51158979 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313147 5265 Fabidae View MSA
124063096 5270 Rosid View MSA
123741004 5271 Pentapetalae View MSA
122785820 5272 Eudicot View MSA
122046591 5273 Angiosperm View MSA
121310628 5274 Embryophyte View MSA
123348063 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.09803 0.0 24.8438    
cufflinks 12.7317 0.0 34.1878    
cufflinks 10.6317 0.0 28.7833    
cufflinks 13.4122 0.0 35.9477    
cufflinks 12.147 0.0 32.6307    
cufflinks 10.3589 0.0 28.0417    
cufflinks 26.3501 0.0 70.8482 High High
cufflinks 8.59346 0.0 23.5669   Low
cufflinks 11.2056 0.0 30.2286    
cufflinks 4.841        
cufflinks 6.548     High  
cufflinks 6.945        
cufflinks 3.468       Low
cufflinks 3.306       Low
cufflinks 5.461     High  
cufflinks 9.971     High High
cufflinks 3.662       Low
cufflinks 7.29     High  
cufflinks 9.059     High  
cufflinks 12.162     High High
cufflinks 6.951     High  
cufflinks 9.879     High  
cufflinks 7.779     High  
cufflinks 8.001     High  
cufflinks 10.638     High High
cufflinks 4.91        

0 Strain