Gene : Glyma.01G177100 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR12320:SF16 - PROTEIN PHOSPHATASE 2C 80-RELATED Genomic Order:  1771
Name:  ? Glyma.01G177100 Secondary Identifier:  ? PAC:30544037
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G177100 0.5kb upstream 0.5kb upstream 3061 true Chr01: 51354244-51357304 Glycine max
Glyma.01G177100 0.5kb upstream 0.5kb upstream 500 false Chr01: 51356805-51357304 Glycine max
Glyma.01G177100 0.5kb downstream 0.5kb downstream 3061 true Chr01: 51353744-51356804 Glycine max
Glyma.01G177100 0.5kb downstream 0.5kb downstream 500 false Chr01: 51353744-51354243 Glycine max
Glyma.01G177100 1.0kb upstream 1.0kb upstream 3561 true Chr01: 51354244-51357804 Glycine max
Glyma.01G177100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51356805-51357804 Glycine max
Glyma.01G177100 1.0kb downstream 1.0kb downstream 3561 true Chr01: 51353244-51356804 Glycine max
Glyma.01G177100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51353244-51354243 Glycine max
Glyma.01G177100 2.0kb upstream 2.0kb upstream 4561 true Chr01: 51354244-51358804 Glycine max
Glyma.01G177100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51356805-51358804 Glycine max
Glyma.01G177100 2.0kb downstream 2.0kb downstream 4561 true Chr01: 51352244-51356804 Glycine max
Glyma.01G177100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51352244-51354243 Glycine max
Glyma.01G177100 5.0kb upstream 5.0kb upstream 7561 true Chr01: 51354244-51361804 Glycine max
Glyma.01G177100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51356805-51361804 Glycine max
Glyma.01G177100 5.0kb downstream 5.0kb downstream 7561 true Chr01: 51349244-51356804 Glycine max
Glyma.01G177100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51349244-51354243 Glycine max
Glyma.01G177100 10.0kb upstream 10.0kb upstream 12561 true Chr01: 51354244-51366804 Glycine max
Glyma.01G177100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51356805-51366804 Glycine max
Glyma.01G177100 10.0kb downstream 10.0kb downstream 12561 true Chr01: 51344244-51356804 Glycine max
Glyma.01G177100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51344244-51354243 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248035 5265 Fabidae Singleton cluster - no MSA
124041650 5270 Rosid View MSA
123743389 5271 Pentapetalae View MSA
122796886 5272 Eudicot View MSA
122043108 5273 Angiosperm View MSA
121351334 5274 Embryophyte View MSA
123428574 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.293009 0.0 1.12697   High
cufflinks 0.116409 0.0 0.463853 Low  
cufflinks 0.116814 0.0 0.465046 Low  
cufflinks 0.0926991 0.0 0.372528 Low  
cufflinks 0.189038 0.0 0.740254 Low  
cufflinks 0.0637604 0.0 0.260687 Low  
cufflinks 0.0298217 0.0 0.128439 Low Low
cufflinks 0.117633 0.0 0.46837 Low  
cufflinks 0.13599 0.0 0.538736 Low  
cufflinks 0.03     Low  
cufflinks 0.008     Low Low
cufflinks 0.181        
cufflinks 0.094     Low  
cufflinks 0.192        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.124        
cufflinks 0.012     Low Low
cufflinks 0.188        
cufflinks 0.111        
cufflinks 0.097        
cufflinks 0.061     Low  
cufflinks 0.101        
cufflinks 0.251       High
cufflinks 0.03     Low  
cufflinks 0.105        
cufflinks 0.062     Low  

0 Strain