Gene : Glyma.01G176800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  1768
Name:  ? Glyma.01G176800 Secondary Identifier:  ? PAC:30541692
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G176800 0.5kb upstream 0.5kb upstream 4087 true Chr01: 51342133-51346219 Glycine max
Glyma.01G176800 0.5kb upstream 0.5kb upstream 500 false Chr01: 51345720-51346219 Glycine max
Glyma.01G176800 0.5kb downstream 0.5kb downstream 4087 true Chr01: 51341633-51345719 Glycine max
Glyma.01G176800 0.5kb downstream 0.5kb downstream 500 false Chr01: 51341633-51342132 Glycine max
Glyma.01G176800 1.0kb upstream 1.0kb upstream 4587 true Chr01: 51342133-51346719 Glycine max
Glyma.01G176800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51345720-51346719 Glycine max
Glyma.01G176800 1.0kb downstream 1.0kb downstream 4587 true Chr01: 51341133-51345719 Glycine max
Glyma.01G176800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51341133-51342132 Glycine max
Glyma.01G176800 2.0kb upstream 2.0kb upstream 5587 true Chr01: 51342133-51347719 Glycine max
Glyma.01G176800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51345720-51347719 Glycine max
Glyma.01G176800 2.0kb downstream 2.0kb downstream 5587 true Chr01: 51340133-51345719 Glycine max
Glyma.01G176800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51340133-51342132 Glycine max
Glyma.01G176800 5.0kb upstream 5.0kb upstream 8587 true Chr01: 51342133-51350719 Glycine max
Glyma.01G176800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51345720-51350719 Glycine max
Glyma.01G176800 5.0kb downstream 5.0kb downstream 8587 true Chr01: 51337133-51345719 Glycine max
Glyma.01G176800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51337133-51342132 Glycine max
Glyma.01G176800 10.0kb upstream 10.0kb upstream 13587 true Chr01: 51342133-51355719 Glycine max
Glyma.01G176800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51345720-51355719 Glycine max
Glyma.01G176800 10.0kb downstream 10.0kb downstream 13587 true Chr01: 51332133-51345719 Glycine max
Glyma.01G176800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51332133-51342132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
122300675 5265 Fabidae View MSA
124067853 5270 Rosid View MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.5702 0.0 186.67 High  
cufflinks 33.7264 0.0 131.184 High  
cufflinks 24.3258 0.0 91.9287 High Low
cufflinks 32.7819 0.0 127.238 High  
cufflinks 59.5501 0.0 261.415 High High
cufflinks 54.9 0.0 235.9 High High
cufflinks 47.314 0.0 194.977 High  
cufflinks 27.7 0.0 105.412 High Low
cufflinks 48.4513 0.0 201.409 High  
cufflinks 4.87        
cufflinks 4.557        
cufflinks 5.453        
cufflinks 11.711     High High
cufflinks 13.753     High High
cufflinks 4.86        
cufflinks 6.314        
cufflinks 4.339       Low
cufflinks 5.565        
cufflinks 5.421        
cufflinks 7.087     High  
cufflinks 5.443        
cufflinks 6.202        
cufflinks 4.772        
cufflinks 5.609        
cufflinks 6.606        
cufflinks 5.631        

0 Strain