Gene : Glyma.01G108000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE Genomic Order:  1080
Name:  ? Glyma.01G108000 Secondary Identifier:  ? PAC:30543666
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G108000 0.5kb upstream 0.5kb upstream 5250 true Chr01: 36876801-36882050 Glycine max
Glyma.01G108000 0.5kb upstream 0.5kb upstream 500 false Chr01: 36881551-36882050 Glycine max
Glyma.01G108000 0.5kb downstream 0.5kb downstream 5250 true Chr01: 36876301-36881550 Glycine max
Glyma.01G108000 0.5kb downstream 0.5kb downstream 500 false Chr01: 36876301-36876800 Glycine max
Glyma.01G108000 1.0kb upstream 1.0kb upstream 5750 true Chr01: 36876801-36882550 Glycine max
Glyma.01G108000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 36881551-36882550 Glycine max
Glyma.01G108000 1.0kb downstream 1.0kb downstream 5750 true Chr01: 36875801-36881550 Glycine max
Glyma.01G108000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 36875801-36876800 Glycine max
Glyma.01G108000 2.0kb upstream 2.0kb upstream 6750 true Chr01: 36876801-36883550 Glycine max
Glyma.01G108000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 36881551-36883550 Glycine max
Glyma.01G108000 2.0kb downstream 2.0kb downstream 6750 true Chr01: 36874801-36881550 Glycine max
Glyma.01G108000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 36874801-36876800 Glycine max
Glyma.01G108000 5.0kb upstream 5.0kb upstream 9750 true Chr01: 36876801-36886550 Glycine max
Glyma.01G108000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 36881551-36886550 Glycine max
Glyma.01G108000 5.0kb downstream 5.0kb downstream 9750 true Chr01: 36871801-36881550 Glycine max
Glyma.01G108000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 36871801-36876800 Glycine max
Glyma.01G108000 10.0kb upstream 10.0kb upstream 14750 true Chr01: 36876801-36891550 Glycine max
Glyma.01G108000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 36881551-36891550 Glycine max
Glyma.01G108000 10.0kb downstream 10.0kb downstream 14750 true Chr01: 36866801-36881550 Glycine max
Glyma.01G108000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 36866801-36876800 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306014 5265 Fabidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.50523 0.0 13.3074   Low
cufflinks 10.9281 0.0 29.6071    
cufflinks 8.21733 0.0 22.6623    
cufflinks 9.15103 0.0 25.0543    
cufflinks 10.4992 0.0 28.4984    
cufflinks 35.4055 0.0 96.5544 High High
cufflinks 7.08176 0.0 19.8347    
cufflinks 13.421 0.0 36.0035    
cufflinks 16.2896 0.0 43.5015    
cufflinks 3.779        
cufflinks 9.137     High High
cufflinks 3.349        
cufflinks 4.194        
cufflinks 3.409        
cufflinks 4.512        
cufflinks 3.595        
cufflinks 10.383     High High
cufflinks 3.866        
cufflinks 3.888        
cufflinks 2.64       Low
cufflinks 8.244     High High
cufflinks 2.635       Low
cufflinks 3.892        
cufflinks 8.554     High High
cufflinks 2.668       Low
cufflinks 9.234     High High

0 Strain