Gene : Glyma.01G115900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21649:SF6 - CHLOROPHYLL A-B BINDING PROTEIN CP29.1, CHLOROPLASTIC-RELATED Genomic Order:  1159
Name:  ? Glyma.01G115900 Secondary Identifier:  ? PAC:30541543
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G115900 0.5kb upstream 0.5kb upstream 3281 true Chr01: 40072016-40075296 Glycine max
Glyma.01G115900 0.5kb upstream 0.5kb upstream 500 false Chr01: 40074797-40075296 Glycine max
Glyma.01G115900 0.5kb downstream 0.5kb downstream 3281 true Chr01: 40071516-40074796 Glycine max
Glyma.01G115900 0.5kb downstream 0.5kb downstream 500 false Chr01: 40071516-40072015 Glycine max
Glyma.01G115900 1.0kb upstream 1.0kb upstream 3781 true Chr01: 40072016-40075796 Glycine max
Glyma.01G115900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 40074797-40075796 Glycine max
Glyma.01G115900 1.0kb downstream 1.0kb downstream 3781 true Chr01: 40071016-40074796 Glycine max
Glyma.01G115900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 40071016-40072015 Glycine max
Glyma.01G115900 2.0kb upstream 2.0kb upstream 4781 true Chr01: 40072016-40076796 Glycine max
Glyma.01G115900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 40074797-40076796 Glycine max
Glyma.01G115900 2.0kb downstream 2.0kb downstream 4781 true Chr01: 40070016-40074796 Glycine max
Glyma.01G115900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 40070016-40072015 Glycine max
Glyma.01G115900 5.0kb upstream 5.0kb upstream 7781 true Chr01: 40072016-40079796 Glycine max
Glyma.01G115900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 40074797-40079796 Glycine max
Glyma.01G115900 5.0kb downstream 5.0kb downstream 7781 true Chr01: 40067016-40074796 Glycine max
Glyma.01G115900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 40067016-40072015 Glycine max
Glyma.01G115900 10.0kb upstream 10.0kb upstream 12781 true Chr01: 40072016-40084796 Glycine max
Glyma.01G115900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 40074797-40084796 Glycine max
Glyma.01G115900 10.0kb downstream 10.0kb downstream 12781 true Chr01: 40062016-40074796 Glycine max
Glyma.01G115900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 40062016-40072015 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306293 5265 Fabidae View MSA
124062500 5270 Rosid View MSA
123736418 5271 Pentapetalae View MSA
122792192 5272 Eudicot View MSA
122044716 5273 Angiosperm View MSA
121345249 5274 Embryophyte View MSA
123428168 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 324.667 0.0 1332.31 High  
cufflinks 338.394 0.0 1387.69 High  
cufflinks 152.091 0.0 500.926 High  
cufflinks 226.483 0.0 829.194 High  
cufflinks 20.971 0.0 55.9897 High Low
cufflinks 18.4856 0.0 49.324   Low
cufflinks 161.655 0.0 550.636 High  
cufflinks 169.356 0.0 577.431 High  
cufflinks 11.9629 0.0 32.3176   Low
cufflinks 128.272     High  
cufflinks 0.701        
cufflinks 92.395     High  
cufflinks 0.438        
cufflinks 0.382       Low
cufflinks 1.02        
cufflinks 370.24     High High
cufflinks 0.17       Low
cufflinks 74.142     High  
cufflinks 143.294     High  
cufflinks 424.535     High High
cufflinks 0.375       Low
cufflinks 417.519     High High
cufflinks 293.745     High  
cufflinks 0.506        
cufflinks 416.524     High High
cufflinks 0.189       Low

0 Strain