Gene : Glyma.01G120800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR35499:SF2 - ALC-INTERACTING PROTEIN 1 Genomic Order:  1208
Name:  ? Glyma.01G120800 Secondary Identifier:  ? PAC:30544582
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G120800 0.5kb upstream 0.5kb upstream 2696 true Chr01: 41380196-41382891 Glycine max
Glyma.01G120800 0.5kb upstream 0.5kb upstream 500 false Chr01: 41380196-41380695 Glycine max
Glyma.01G120800 0.5kb downstream 0.5kb downstream 2696 true Chr01: 41380696-41383391 Glycine max
Glyma.01G120800 0.5kb downstream 0.5kb downstream 500 false Chr01: 41382892-41383391 Glycine max
Glyma.01G120800 1.0kb upstream 1.0kb upstream 3196 true Chr01: 41379696-41382891 Glycine max
Glyma.01G120800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41379696-41380695 Glycine max
Glyma.01G120800 1.0kb downstream 1.0kb downstream 3196 true Chr01: 41380696-41383891 Glycine max
Glyma.01G120800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41382892-41383891 Glycine max
Glyma.01G120800 2.0kb upstream 2.0kb upstream 4196 true Chr01: 41378696-41382891 Glycine max
Glyma.01G120800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41378696-41380695 Glycine max
Glyma.01G120800 2.0kb downstream 2.0kb downstream 4196 true Chr01: 41380696-41384891 Glycine max
Glyma.01G120800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41382892-41384891 Glycine max
Glyma.01G120800 5.0kb upstream 5.0kb upstream 7196 true Chr01: 41375696-41382891 Glycine max
Glyma.01G120800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41375696-41380695 Glycine max
Glyma.01G120800 5.0kb downstream 5.0kb downstream 7196 true Chr01: 41380696-41387891 Glycine max
Glyma.01G120800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41382892-41387891 Glycine max
Glyma.01G120800 10.0kb upstream 10.0kb upstream 12196 true Chr01: 41370696-41382891 Glycine max
Glyma.01G120800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41370696-41380695 Glycine max
Glyma.01G120800 10.0kb downstream 10.0kb downstream 12196 true Chr01: 41380696-41392891 Glycine max
Glyma.01G120800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41382892-41392891 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309323 5265 Fabidae View MSA
124062218 5270 Rosid View MSA
123751087 5271 Pentapetalae View MSA
122789400 5272 Eudicot View MSA
122050315 5273 Angiosperm View MSA
121311850 5274 Embryophyte View MSA
123349090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.14872 0.0 9.76139   High
cufflinks 0.535397 0.0 1.97409    
cufflinks 0.502474 0.0 1.85531    
cufflinks 0.351385 0.0 1.32154   Low
cufflinks 1.27106 0.0 4.42624    
cufflinks 0.336944 0.0 1.27117   Low
cufflinks 1.47806 0.0 5.06768    
cufflinks 2.13729 0.0 6.97333    
cufflinks 1.53291 0.0 5.23046    
cufflinks 10.325     High High
cufflinks 9.678     High  
cufflinks 2.139        
cufflinks 1.408       Low
cufflinks 1.123       Low
cufflinks 6.801     High  
cufflinks 4.536        
cufflinks 8.84     High  
cufflinks 0.99       Low
cufflinks 1.396       Low
cufflinks 3.231        
cufflinks 8.828     High  
cufflinks 6.291        
cufflinks 4.533        
cufflinks 6.934     High  
cufflinks 2.51        
cufflinks 14.449     High High

0 Strain