Gene : Glyma.18G259700 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR23076:SF54 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 6, CHLOROPLASTIC Genomic Order:  2597
Name:  ? Glyma.18G259700 Secondary Identifier:  ? PAC:30556646
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G259700 0.5kb upstream 0.5kb upstream 5190 true Chr18: 54577725-54582914 Glycine max
Glyma.18G259700 0.5kb upstream 0.5kb upstream 500 false Chr18: 54582415-54582914 Glycine max
Glyma.18G259700 0.5kb downstream 0.5kb downstream 5190 true Chr18: 54577225-54582414 Glycine max
Glyma.18G259700 0.5kb downstream 0.5kb downstream 500 false Chr18: 54577225-54577724 Glycine max
Glyma.18G259700 1.0kb upstream 1.0kb upstream 5690 true Chr18: 54577725-54583414 Glycine max
Glyma.18G259700 1.0kb upstream 1.0kb upstream 1000 false Chr18: 54582415-54583414 Glycine max
Glyma.18G259700 1.0kb downstream 1.0kb downstream 5690 true Chr18: 54576725-54582414 Glycine max
Glyma.18G259700 1.0kb downstream 1.0kb downstream 1000 false Chr18: 54576725-54577724 Glycine max
Glyma.18G259700 2.0kb upstream 2.0kb upstream 6690 true Chr18: 54577725-54584414 Glycine max
Glyma.18G259700 2.0kb upstream 2.0kb upstream 2000 false Chr18: 54582415-54584414 Glycine max
Glyma.18G259700 2.0kb downstream 2.0kb downstream 6690 true Chr18: 54575725-54582414 Glycine max
Glyma.18G259700 2.0kb downstream 2.0kb downstream 2000 false Chr18: 54575725-54577724 Glycine max
Glyma.18G259700 5.0kb upstream 5.0kb upstream 9690 true Chr18: 54577725-54587414 Glycine max
Glyma.18G259700 5.0kb upstream 5.0kb upstream 5000 false Chr18: 54582415-54587414 Glycine max
Glyma.18G259700 5.0kb downstream 5.0kb downstream 9690 true Chr18: 54572725-54582414 Glycine max
Glyma.18G259700 5.0kb downstream 5.0kb downstream 5000 false Chr18: 54572725-54577724 Glycine max
Glyma.18G259700 10.0kb upstream 10.0kb upstream 14690 true Chr18: 54577725-54592414 Glycine max
Glyma.18G259700 10.0kb upstream 10.0kb upstream 10000 false Chr18: 54582415-54592414 Glycine max
Glyma.18G259700 10.0kb downstream 10.0kb downstream 14690 true Chr18: 54567725-54582414 Glycine max
Glyma.18G259700 10.0kb downstream 10.0kb downstream 10000 false Chr18: 54567725-54577724 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300352 5265 Fabidae View MSA
124066347 5270 Rosid View MSA
123741338 5271 Pentapetalae View MSA
122790774 5272 Eudicot View MSA
122046550 5273 Angiosperm View MSA
121351325 5274 Embryophyte View MSA
123426403 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.82401 0.0 5.54213   High
cufflinks 1.90004 0.0 5.74461   High
cufflinks 0.822417 0.0 2.77438    
cufflinks 0.403155 0.0 1.45118    
cufflinks 0.336078 0.0 1.2256    
cufflinks 0.395284 0.0 1.42617    
cufflinks 1.06078 0.0 3.48562    
cufflinks 0.365932 0.0 1.32587    
cufflinks 0.417789 0.0 1.50189    
cufflinks 0.049     Low  
cufflinks 0.037     Low  
cufflinks 0.546        
cufflinks 0.087     Low  
cufflinks 0.123        
cufflinks 0.02     Low Low
cufflinks 0.687        
cufflinks 0.02     Low Low
cufflinks 0.409        
cufflinks 0.251        
cufflinks 1.041       High
cufflinks 0.025     Low Low
cufflinks 1.196       High
cufflinks 0.684        
cufflinks 0.033     Low  
cufflinks 0.995       High
cufflinks 0.011     Low Low

0 Strain