Gene : Glyma.01G126200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11954:SF25 - LS1-LIKE PROTEIN Genomic Order:  1262
Name:  ? Glyma.01G126200 Secondary Identifier:  ? PAC:30542296
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6498 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G126200 0.5kb upstream 0.5kb upstream 4217 true Chr01: 43506868-43511084 Glycine max
Glyma.01G126200 0.5kb upstream 0.5kb upstream 500 false Chr01: 43510585-43511084 Glycine max
Glyma.01G126200 0.5kb downstream 0.5kb downstream 4217 true Chr01: 43506368-43510584 Glycine max
Glyma.01G126200 0.5kb downstream 0.5kb downstream 500 false Chr01: 43506368-43506867 Glycine max
Glyma.01G126200 1.0kb upstream 1.0kb upstream 4717 true Chr01: 43506868-43511584 Glycine max
Glyma.01G126200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43510585-43511584 Glycine max
Glyma.01G126200 1.0kb downstream 1.0kb downstream 4717 true Chr01: 43505868-43510584 Glycine max
Glyma.01G126200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43505868-43506867 Glycine max
Glyma.01G126200 2.0kb upstream 2.0kb upstream 5717 true Chr01: 43506868-43512584 Glycine max
Glyma.01G126200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43510585-43512584 Glycine max
Glyma.01G126200 2.0kb downstream 2.0kb downstream 5717 true Chr01: 43504868-43510584 Glycine max
Glyma.01G126200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43504868-43506867 Glycine max
Glyma.01G126200 5.0kb upstream 5.0kb upstream 8717 true Chr01: 43506868-43515584 Glycine max
Glyma.01G126200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43510585-43515584 Glycine max
Glyma.01G126200 5.0kb downstream 5.0kb downstream 8717 true Chr01: 43501868-43510584 Glycine max
Glyma.01G126200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43501868-43506867 Glycine max
Glyma.01G126200 10.0kb upstream 10.0kb upstream 13717 true Chr01: 43506868-43520584 Glycine max
Glyma.01G126200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43510585-43520584 Glycine max
Glyma.01G126200 10.0kb downstream 10.0kb downstream 13717 true Chr01: 43496868-43510584 Glycine max
Glyma.01G126200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43496868-43506867 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
122315018 5265 Fabidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.1881 0.0 11.3329    
cufflinks 1.12043 0.0 4.22144   Low
cufflinks 13.1369 0.0 38.9682    
cufflinks 5.40204 0.0 18.2009    
cufflinks 8.20146 0.0 26.2729    
cufflinks 48.2426 0.0 129.059 High High
cufflinks 2.93884 0.0 10.5094    
cufflinks 10.3756 0.0 31.9949    
cufflinks 13.3974 0.0 39.9078    
cufflinks 2.429        
cufflinks 1.895        
cufflinks 2.492        
cufflinks 2.582        
cufflinks 1.548        
cufflinks 0.269       Low
cufflinks 0.815        
cufflinks 2.959       High
cufflinks 0.789        
cufflinks 0.452       Low
cufflinks 1.095        
cufflinks 1.886        
cufflinks 0.957        
cufflinks 1.15        
cufflinks 3.991       High
cufflinks 1.186        
cufflinks 1.73        

0 Strain