Gene : Glyma.18G261000 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR24012:SF386 - PHRAGMOPLASTIN INTERACTING PROTEIN 1 Genomic Order:  2610
Name:  ? Glyma.18G261000 Secondary Identifier:  ? PAC:30555823
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G261000 0.5kb upstream 0.5kb upstream 6561 true Chr18: 54686765-54693325 Glycine max
Glyma.18G261000 0.5kb upstream 0.5kb upstream 500 false Chr18: 54692826-54693325 Glycine max
Glyma.18G261000 0.5kb downstream 0.5kb downstream 6561 true Chr18: 54686265-54692825 Glycine max
Glyma.18G261000 0.5kb downstream 0.5kb downstream 500 false Chr18: 54686265-54686764 Glycine max
Glyma.18G261000 1.0kb upstream 1.0kb upstream 7061 true Chr18: 54686765-54693825 Glycine max
Glyma.18G261000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 54692826-54693825 Glycine max
Glyma.18G261000 1.0kb downstream 1.0kb downstream 7061 true Chr18: 54685765-54692825 Glycine max
Glyma.18G261000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 54685765-54686764 Glycine max
Glyma.18G261000 2.0kb upstream 2.0kb upstream 8061 true Chr18: 54686765-54694825 Glycine max
Glyma.18G261000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 54692826-54694825 Glycine max
Glyma.18G261000 2.0kb downstream 2.0kb downstream 8061 true Chr18: 54684765-54692825 Glycine max
Glyma.18G261000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 54684765-54686764 Glycine max
Glyma.18G261000 5.0kb upstream 5.0kb upstream 11061 true Chr18: 54686765-54697825 Glycine max
Glyma.18G261000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 54692826-54697825 Glycine max
Glyma.18G261000 5.0kb downstream 5.0kb downstream 11061 true Chr18: 54681765-54692825 Glycine max
Glyma.18G261000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 54681765-54686764 Glycine max
Glyma.18G261000 10.0kb upstream 10.0kb upstream 16061 true Chr18: 54686765-54702825 Glycine max
Glyma.18G261000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 54692826-54702825 Glycine max
Glyma.18G261000 10.0kb downstream 10.0kb downstream 16061 true Chr18: 54676765-54692825 Glycine max
Glyma.18G261000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 54676765-54686764 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312485 5265 Fabidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.071 0.0 37.632    
cufflinks 10.2783 0.0 27.8431    
cufflinks 16.1048 0.0 42.9863   High
cufflinks 11.0438 0.0 29.784    
cufflinks 10.4752 0.0 28.2959    
cufflinks 9.9133 0.0 26.8723    
cufflinks 8.82967 0.0 24.1081    
cufflinks 13.7225 0.0 36.719    
cufflinks 7.04585 0.0 19.5944   Low
cufflinks 2.726        
cufflinks 2.963        
cufflinks 2.969        
cufflinks 2.42       Low
cufflinks 2.743        
cufflinks 3.372        
cufflinks 2.953        
cufflinks 2.052       Low
cufflinks 2.838        
cufflinks 3.057        
cufflinks 3.54       High
cufflinks 3.241        
cufflinks 3.306        
cufflinks 3.025        
cufflinks 3.417       High
cufflinks 2.902        
cufflinks 3.116        

0 Strain