Gene : Glyma.01G139600 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  1396
Name:  ? Glyma.01G139600 Secondary Identifier:  ? PAC:30543817
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARO-PWY Glycine max pathologic  
Gmax PWY-6163 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G139600 0.5kb upstream 0.5kb upstream 9261 true Chr01: 46734395-46743655 Glycine max
Glyma.01G139600 0.5kb upstream 0.5kb upstream 500 false Chr01: 46743156-46743655 Glycine max
Glyma.01G139600 0.5kb downstream 0.5kb downstream 9261 true Chr01: 46733895-46743155 Glycine max
Glyma.01G139600 0.5kb downstream 0.5kb downstream 500 false Chr01: 46733895-46734394 Glycine max
Glyma.01G139600 1.0kb upstream 1.0kb upstream 9761 true Chr01: 46734395-46744155 Glycine max
Glyma.01G139600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46743156-46744155 Glycine max
Glyma.01G139600 1.0kb downstream 1.0kb downstream 9761 true Chr01: 46733395-46743155 Glycine max
Glyma.01G139600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46733395-46734394 Glycine max
Glyma.01G139600 2.0kb upstream 2.0kb upstream 10761 true Chr01: 46734395-46745155 Glycine max
Glyma.01G139600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46743156-46745155 Glycine max
Glyma.01G139600 2.0kb downstream 2.0kb downstream 10761 true Chr01: 46732395-46743155 Glycine max
Glyma.01G139600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46732395-46734394 Glycine max
Glyma.01G139600 5.0kb upstream 5.0kb upstream 13761 true Chr01: 46734395-46748155 Glycine max
Glyma.01G139600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46743156-46748155 Glycine max
Glyma.01G139600 5.0kb downstream 5.0kb downstream 13761 true Chr01: 46729395-46743155 Glycine max
Glyma.01G139600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46729395-46734394 Glycine max
Glyma.01G139600 10.0kb upstream 10.0kb upstream 18761 true Chr01: 46734395-46753155 Glycine max
Glyma.01G139600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46743156-46753155 Glycine max
Glyma.01G139600 10.0kb downstream 10.0kb downstream 18761 true Chr01: 46724395-46743155 Glycine max
Glyma.01G139600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46724395-46734394 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306052 5265 Fabidae View MSA
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.1209 0.0 48.4757    
cufflinks 27.215 0.0 74.1538 High  
cufflinks 11.4943 0.0 30.7322   Low
cufflinks 41.2722 0.0 117.133 High High
cufflinks 24.7037 0.0 66.9389 High  
cufflinks 40.9469 0.0 116.012 High High
cufflinks 27.6688 0.0 75.543 High  
cufflinks 26.2579 0.0 71.4689 High  
cufflinks 20.7933 0.0 55.8877 High  
cufflinks 10.262     High High
cufflinks 1.623       Low
cufflinks 4.358        
cufflinks 10.082     High High
cufflinks 6.994     High  
cufflinks 1.165       Low
cufflinks 5.936        
cufflinks 4.947        
cufflinks 7.896     High  
cufflinks 11.286     High High
cufflinks 5.155        
cufflinks 2.482       Low
cufflinks 5.787        
cufflinks 9.343     High  
cufflinks 4.286        
cufflinks 5.419        
cufflinks 4.55        

0 Strain