Gene : Glyma.01G143900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31529:SF3 - LOB DOMAIN-CONTAINING PROTEIN 18-RELATED Genomic Order:  1439
Name:  ? Glyma.01G143900 Secondary Identifier:  ? PAC:30543002
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G143900 0.5kb upstream 0.5kb upstream 5403 true Chr01: 47782288-47787690 Glycine max
Glyma.01G143900 0.5kb upstream 0.5kb upstream 500 false Chr01: 47782288-47782787 Glycine max
Glyma.01G143900 0.5kb downstream 0.5kb downstream 5403 true Chr01: 47782788-47788190 Glycine max
Glyma.01G143900 0.5kb downstream 0.5kb downstream 500 false Chr01: 47787691-47788190 Glycine max
Glyma.01G143900 1.0kb upstream 1.0kb upstream 5903 true Chr01: 47781788-47787690 Glycine max
Glyma.01G143900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47781788-47782787 Glycine max
Glyma.01G143900 1.0kb downstream 1.0kb downstream 5903 true Chr01: 47782788-47788690 Glycine max
Glyma.01G143900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47787691-47788690 Glycine max
Glyma.01G143900 2.0kb upstream 2.0kb upstream 6903 true Chr01: 47780788-47787690 Glycine max
Glyma.01G143900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47780788-47782787 Glycine max
Glyma.01G143900 2.0kb downstream 2.0kb downstream 6903 true Chr01: 47782788-47789690 Glycine max
Glyma.01G143900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47787691-47789690 Glycine max
Glyma.01G143900 5.0kb upstream 5.0kb upstream 9903 true Chr01: 47777788-47787690 Glycine max
Glyma.01G143900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47777788-47782787 Glycine max
Glyma.01G143900 5.0kb downstream 5.0kb downstream 9903 true Chr01: 47782788-47792690 Glycine max
Glyma.01G143900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47787691-47792690 Glycine max
Glyma.01G143900 10.0kb upstream 10.0kb upstream 14903 true Chr01: 47772788-47787690 Glycine max
Glyma.01G143900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47772788-47782787 Glycine max
Glyma.01G143900 10.0kb downstream 10.0kb downstream 14903 true Chr01: 47782788-47797690 Glycine max
Glyma.01G143900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47787691-47797690 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305251 5265 Fabidae View MSA
124061672 5270 Rosid View MSA
123743730 5271 Pentapetalae View MSA
122791907 5272 Eudicot View MSA
122045879 5273 Angiosperm View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.125471 0.0 0.502301 Low  
cufflinks 0.281603 0.0 1.09373    
cufflinks 1.18273 0.0 4.28779    
cufflinks 0.022371 0.0 0.100384 Low Low
cufflinks 0.923559 0.0 3.39502    
cufflinks 4.78966 0.0 14.98   High
cufflinks 0.252356 0.0 0.98423    
cufflinks 0.460366 0.0 1.74802    
cufflinks 1.3302 0.0 4.77685    
cufflinks 0.049     Low Low
cufflinks 0.981       High
cufflinks 0.211        
cufflinks 0.561        
cufflinks 0.307        
cufflinks 0.072        
cufflinks 0.107        
cufflinks 0.699       High
cufflinks 0.069     Low Low
cufflinks 0.07     Low  
cufflinks 0.113        
cufflinks 0.773       High
cufflinks 0.108        
cufflinks 0.07     Low  
cufflinks 0.734       High
cufflinks 0.103        
cufflinks 0.671       High

0 Strain