Gene : Glyma.01G143800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31529:SF7 - LOB DOMAIN-CONTAINING PROTEIN 19-RELATED Genomic Order:  1438
Name:  ? Glyma.01G143800 Secondary Identifier:  ? PAC:30543835
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G143800 0.5kb upstream 0.5kb upstream 5651 true Chr01: 47752699-47758349 Glycine max
Glyma.01G143800 0.5kb upstream 0.5kb upstream 500 false Chr01: 47757850-47758349 Glycine max
Glyma.01G143800 0.5kb downstream 0.5kb downstream 5651 true Chr01: 47752199-47757849 Glycine max
Glyma.01G143800 0.5kb downstream 0.5kb downstream 500 false Chr01: 47752199-47752698 Glycine max
Glyma.01G143800 1.0kb upstream 1.0kb upstream 6151 true Chr01: 47752699-47758849 Glycine max
Glyma.01G143800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47757850-47758849 Glycine max
Glyma.01G143800 1.0kb downstream 1.0kb downstream 6151 true Chr01: 47751699-47757849 Glycine max
Glyma.01G143800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47751699-47752698 Glycine max
Glyma.01G143800 2.0kb upstream 2.0kb upstream 7151 true Chr01: 47752699-47759849 Glycine max
Glyma.01G143800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47757850-47759849 Glycine max
Glyma.01G143800 2.0kb downstream 2.0kb downstream 7151 true Chr01: 47750699-47757849 Glycine max
Glyma.01G143800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47750699-47752698 Glycine max
Glyma.01G143800 5.0kb upstream 5.0kb upstream 10151 true Chr01: 47752699-47762849 Glycine max
Glyma.01G143800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47757850-47762849 Glycine max
Glyma.01G143800 5.0kb downstream 5.0kb downstream 10151 true Chr01: 47747699-47757849 Glycine max
Glyma.01G143800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47747699-47752698 Glycine max
Glyma.01G143800 10.0kb upstream 10.0kb upstream 15151 true Chr01: 47752699-47767849 Glycine max
Glyma.01G143800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47757850-47767849 Glycine max
Glyma.01G143800 10.0kb downstream 10.0kb downstream 15151 true Chr01: 47742699-47757849 Glycine max
Glyma.01G143800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47742699-47752698 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248060 5265 Fabidae Singleton cluster - no MSA
124061672 5270 Rosid View MSA
123743730 5271 Pentapetalae View MSA
122791907 5272 Eudicot View MSA
122045879 5273 Angiosperm View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.414359 0.0 4.00719    
cufflinks 0.886536 0.0 6.72347    
cufflinks 1.22956 0.0 8.43401    
cufflinks 0.439711 0.0 4.65103    
cufflinks 1.60016 0.0 10.0102    
cufflinks 6.36418 0.0 22.7579   High
cufflinks 0.902025 0.0 7.43212    
cufflinks 0.335514 0.0 3.40103   Low
cufflinks 2.06183 0.0 11.5953    
cufflinks 0.107        
cufflinks 0.666       High
cufflinks 0.116     Low  
cufflinks 0.389       High
cufflinks 0.321        
cufflinks 0.116        
cufflinks 0.102        
cufflinks 0.067     Low Low
cufflinks 0.097     Low  
cufflinks 0.083     Low  
cufflinks 0.145        
cufflinks 0.302        
cufflinks 0.099        
cufflinks 0.064     Low Low
cufflinks 0.642       High
cufflinks 0.066     Low Low
cufflinks 0.618       High

0 Strain