Gene : Glyma.18G253600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11785:SF407 - CATIONIC AMINO ACID TRANSPORTER 9, CHLOROPLASTIC Genomic Order:  2536
Name:  ? Glyma.18G253600 Secondary Identifier:  ? PAC:30554974
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G253600 0.5kb upstream 0.5kb upstream 5584 true Chr18: 53994068-53999651 Glycine max
Glyma.18G253600 0.5kb upstream 0.5kb upstream 500 false Chr18: 53994068-53994567 Glycine max
Glyma.18G253600 0.5kb downstream 0.5kb downstream 5584 true Chr18: 53994568-54000151 Glycine max
Glyma.18G253600 0.5kb downstream 0.5kb downstream 500 false Chr18: 53999652-54000151 Glycine max
Glyma.18G253600 1.0kb upstream 1.0kb upstream 6084 true Chr18: 53993568-53999651 Glycine max
Glyma.18G253600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 53993568-53994567 Glycine max
Glyma.18G253600 1.0kb downstream 1.0kb downstream 6084 true Chr18: 53994568-54000651 Glycine max
Glyma.18G253600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 53999652-54000651 Glycine max
Glyma.18G253600 2.0kb upstream 2.0kb upstream 7084 true Chr18: 53992568-53999651 Glycine max
Glyma.18G253600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 53992568-53994567 Glycine max
Glyma.18G253600 2.0kb downstream 2.0kb downstream 7084 true Chr18: 53994568-54001651 Glycine max
Glyma.18G253600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 53999652-54001651 Glycine max
Glyma.18G253600 5.0kb upstream 5.0kb upstream 10084 true Chr18: 53989568-53999651 Glycine max
Glyma.18G253600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 53989568-53994567 Glycine max
Glyma.18G253600 5.0kb downstream 5.0kb downstream 10084 true Chr18: 53994568-54004651 Glycine max
Glyma.18G253600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 53999652-54004651 Glycine max
Glyma.18G253600 10.0kb upstream 10.0kb upstream 15084 true Chr18: 53984568-53999651 Glycine max
Glyma.18G253600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 53984568-53994567 Glycine max
Glyma.18G253600 10.0kb downstream 10.0kb downstream 15084 true Chr18: 53994568-54009651 Glycine max
Glyma.18G253600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 53999652-54009651 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306841 5265 Fabidae View MSA
124060661 5270 Rosid View MSA
123749669 5271 Pentapetalae View MSA
122791954 5272 Eudicot View MSA
122045273 5273 Angiosperm View MSA
121343810 5274 Embryophyte View MSA
123428616 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.88127 0.0 26.1424    
cufflinks 3.58957 0.0 16.4001    
cufflinks 5.25355 0.0 23.6392    
cufflinks 6.06648 0.0 28.3398    
cufflinks 4.14244 0.0 21.2995    
cufflinks 5.67684 0.0 19.1196    
cufflinks 2.38917 0.0 10.5456   Low
cufflinks 4.2991 0.0 20.7707    
cufflinks 5.14494 0.0 25.733    
cufflinks 0.203        
cufflinks 0.174        
cufflinks 0.298       High
cufflinks 0.236        
cufflinks 0.202        
cufflinks 0.116       Low
cufflinks 0.135        
cufflinks 0.153        
cufflinks 0.277       High
cufflinks 0.317       High
cufflinks 0.117       Low
cufflinks 0.152        
cufflinks 0.131        
cufflinks 0.267       High
cufflinks 0.221        
cufflinks 0.12       Low
cufflinks 0.159        

0 Strain