Gene : Glyma.01G095900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34971:SF2 - PHOTOSYSTEM II REACTION CENTER PROTEIN Z Genomic Order:  959
Name:  ? Glyma.01G095900 Secondary Identifier:  ? PAC:30542933
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G095900 0.5kb upstream 0.5kb upstream 793 true Chr01: 30190830-30191622 Glycine max
Glyma.01G095900 0.5kb upstream 0.5kb upstream 500 false Chr01: 30190830-30191329 Glycine max
Glyma.01G095900 0.5kb downstream 0.5kb downstream 793 true Chr01: 30191330-30192122 Glycine max
Glyma.01G095900 0.5kb downstream 0.5kb downstream 500 false Chr01: 30191623-30192122 Glycine max
Glyma.01G095900 1.0kb upstream 1.0kb upstream 1293 true Chr01: 30190330-30191622 Glycine max
Glyma.01G095900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30190330-30191329 Glycine max
Glyma.01G095900 1.0kb downstream 1.0kb downstream 1293 true Chr01: 30191330-30192622 Glycine max
Glyma.01G095900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30191623-30192622 Glycine max
Glyma.01G095900 2.0kb upstream 2.0kb upstream 2293 true Chr01: 30189330-30191622 Glycine max
Glyma.01G095900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30189330-30191329 Glycine max
Glyma.01G095900 2.0kb downstream 2.0kb downstream 2293 true Chr01: 30191330-30193622 Glycine max
Glyma.01G095900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30191623-30193622 Glycine max
Glyma.01G095900 5.0kb upstream 5.0kb upstream 5293 true Chr01: 30186330-30191622 Glycine max
Glyma.01G095900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30186330-30191329 Glycine max
Glyma.01G095900 5.0kb downstream 5.0kb downstream 5293 true Chr01: 30191330-30196622 Glycine max
Glyma.01G095900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30191623-30196622 Glycine max
Glyma.01G095900 10.0kb upstream 10.0kb upstream 10293 true Chr01: 30181330-30191622 Glycine max
Glyma.01G095900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30181330-30191329 Glycine max
Glyma.01G095900 10.0kb downstream 10.0kb downstream 10293 true Chr01: 30191330-30201622 Glycine max
Glyma.01G095900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30191623-30201622 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028507 5273 Angiosperm View MSA
122313261 5265 Fabidae View MSA
124050197 5270 Rosid View MSA
123752030 5271 Pentapetalae View MSA
122774318 5272 Eudicot View MSA
121349923 5274 Embryophyte View MSA
123381503 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3324 0.0 58.4063    
cufflinks 6.09507 0.0 23.0018    
cufflinks 2.7598 0.0 10.7285    
cufflinks 62.192 0.0 189.164 High High
cufflinks 2.38955 0.0 9.35726    
cufflinks 2.10698 0.0 8.30171    
cufflinks 26.698 0.0 91.0686 High High
cufflinks 3.09307 0.0 12.0028    
cufflinks 0.439265 0.0 1.87209   Low
cufflinks 3.32        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.891        
cufflinks 0.106       Low
cufflinks 0.145       Low
cufflinks 0.188        
cufflinks 3.692        
cufflinks 0.144       Low
cufflinks 1.416        
cufflinks 1.393        
cufflinks 4.806        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.98        
cufflinks 6.851       High
cufflinks 0.066       Low
cufflinks 6.567       High
cufflinks 0.213        

0 Strain