Gene : Glyma.18G248300 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  2483
Name:  ? Glyma.18G248300 Secondary Identifier:  ? PAC:30556967
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1269 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G248300 0.5kb upstream 0.5kb upstream 8456 true Chr18: 53526586-53535041 Glycine max
Glyma.18G248300 0.5kb upstream 0.5kb upstream 500 false Chr18: 53534542-53535041 Glycine max
Glyma.18G248300 0.5kb downstream 0.5kb downstream 8456 true Chr18: 53526086-53534541 Glycine max
Glyma.18G248300 0.5kb downstream 0.5kb downstream 500 false Chr18: 53526086-53526585 Glycine max
Glyma.18G248300 1.0kb upstream 1.0kb upstream 8956 true Chr18: 53526586-53535541 Glycine max
Glyma.18G248300 1.0kb upstream 1.0kb upstream 1000 false Chr18: 53534542-53535541 Glycine max
Glyma.18G248300 1.0kb downstream 1.0kb downstream 8956 true Chr18: 53525586-53534541 Glycine max
Glyma.18G248300 1.0kb downstream 1.0kb downstream 1000 false Chr18: 53525586-53526585 Glycine max
Glyma.18G248300 2.0kb upstream 2.0kb upstream 9956 true Chr18: 53526586-53536541 Glycine max
Glyma.18G248300 2.0kb upstream 2.0kb upstream 2000 false Chr18: 53534542-53536541 Glycine max
Glyma.18G248300 2.0kb downstream 2.0kb downstream 9956 true Chr18: 53524586-53534541 Glycine max
Glyma.18G248300 2.0kb downstream 2.0kb downstream 2000 false Chr18: 53524586-53526585 Glycine max
Glyma.18G248300 5.0kb upstream 5.0kb upstream 12956 true Chr18: 53526586-53539541 Glycine max
Glyma.18G248300 5.0kb upstream 5.0kb upstream 5000 false Chr18: 53534542-53539541 Glycine max
Glyma.18G248300 5.0kb downstream 5.0kb downstream 12956 true Chr18: 53521586-53534541 Glycine max
Glyma.18G248300 5.0kb downstream 5.0kb downstream 5000 false Chr18: 53521586-53526585 Glycine max
Glyma.18G248300 10.0kb upstream 10.0kb upstream 17956 true Chr18: 53526586-53544541 Glycine max
Glyma.18G248300 10.0kb upstream 10.0kb upstream 10000 false Chr18: 53534542-53544541 Glycine max
Glyma.18G248300 10.0kb downstream 10.0kb downstream 17956 true Chr18: 53516586-53534541 Glycine max
Glyma.18G248300 10.0kb downstream 10.0kb downstream 10000 false Chr18: 53516586-53526585 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307124 5265 Fabidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.76158 0.0 20.9262    
cufflinks 18.6331 0.0 58.2975   High
cufflinks 4.16746 0.0 16.5117   Low
cufflinks 11.0263 0.0 40.6483    
cufflinks 16.8126 0.0 60.9549    
cufflinks 14.0813 0.0 49.1597    
cufflinks 6.34624 0.0 26.9854    
cufflinks 16.6984 0.0 49.8013    
cufflinks 7.72922 0.0 25.8662    
cufflinks 0.987       High
cufflinks 0.059       Low
cufflinks 0.267        
cufflinks 0.635        
cufflinks 0.915       High
cufflinks 0.116       Low
cufflinks 0.576        
cufflinks 0.213        
cufflinks 0.577        
cufflinks 0.765        
cufflinks 0.518        
cufflinks 0.158        
cufflinks 0.612        
cufflinks 0.633        
cufflinks 0.074       Low
cufflinks 0.557        
cufflinks 0.18        

0 Strain