Gene : Glyma.01G053900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11670:SF40 - ACONITATE HYDRATASE 1 Genomic Order:  539
Name:  ? Glyma.01G053900 Secondary Identifier:  ? PAC:30541777
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-6549 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G053900 0.5kb upstream 0.5kb upstream 998 true Chr01: 6835875-6836872 Glycine max
Glyma.01G053900 0.5kb upstream 0.5kb upstream 500 false Chr01: 6836373-6836872 Glycine max
Glyma.01G053900 0.5kb downstream 0.5kb downstream 998 true Chr01: 6835375-6836372 Glycine max
Glyma.01G053900 0.5kb downstream 0.5kb downstream 500 false Chr01: 6835375-6835874 Glycine max
Glyma.01G053900 1.0kb upstream 1.0kb upstream 1498 true Chr01: 6835875-6837372 Glycine max
Glyma.01G053900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6836373-6837372 Glycine max
Glyma.01G053900 1.0kb downstream 1.0kb downstream 1498 true Chr01: 6834875-6836372 Glycine max
Glyma.01G053900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6834875-6835874 Glycine max
Glyma.01G053900 2.0kb upstream 2.0kb upstream 2498 true Chr01: 6835875-6838372 Glycine max
Glyma.01G053900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6836373-6838372 Glycine max
Glyma.01G053900 2.0kb downstream 2.0kb downstream 2498 true Chr01: 6833875-6836372 Glycine max
Glyma.01G053900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6833875-6835874 Glycine max
Glyma.01G053900 5.0kb upstream 5.0kb upstream 5498 true Chr01: 6835875-6841372 Glycine max
Glyma.01G053900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6836373-6841372 Glycine max
Glyma.01G053900 5.0kb downstream 5.0kb downstream 5498 true Chr01: 6830875-6836372 Glycine max
Glyma.01G053900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6830875-6835874 Glycine max
Glyma.01G053900 10.0kb upstream 10.0kb upstream 10498 true Chr01: 6835875-6846372 Glycine max
Glyma.01G053900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6836373-6846372 Glycine max
Glyma.01G053900 10.0kb downstream 10.0kb downstream 10498 true Chr01: 6825875-6836372 Glycine max
Glyma.01G053900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6825875-6835874 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121615532 5273 Angiosperm View MSA
122250584 5265 Fabidae View MSA
123993724 5270 Rosid View MSA
123568461 5271 Pentapetalae View MSA
122603206 5272 Eudicot View MSA
120887722 5274 Embryophyte View MSA
122928476 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.53194 0.0 2.20177    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.42768E-5 0.0 0.00776804 Low Low
cufflinks 0.0918929 0.0 0.441824 Low  
cufflinks 0.135919 0.0 0.624437 Low  
cufflinks 0.642289 0.0 2.62602    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.166119 0.0 0.751848 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.523       Low
cufflinks 1.014        
cufflinks 1.451        
cufflinks 1.984       High
cufflinks 1.908       High
cufflinks 0.929        
cufflinks 0.725        
cufflinks 0.54       Low
cufflinks 1.035        
cufflinks 0.387       Low
cufflinks 2.08       High
cufflinks 1.442        
cufflinks 1.435        
cufflinks 0.506       Low
cufflinks 1.082        
cufflinks 1.066        
cufflinks 0.674        

0 Strain