Gene : Glyma.01G049900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13068//PTHR13068:SF36 - CGI-12 PROTEIN-RELATED Genomic Order:  499
Name:  ? Glyma.01G049900 Secondary Identifier:  ? PAC:30543649
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G049900 0.5kb upstream 0.5kb upstream 1298 true Chr01: 5863028-5864325 Glycine max
Glyma.01G049900 0.5kb upstream 0.5kb upstream 500 false Chr01: 5863826-5864325 Glycine max
Glyma.01G049900 0.5kb downstream 0.5kb downstream 1298 true Chr01: 5862528-5863825 Glycine max
Glyma.01G049900 0.5kb downstream 0.5kb downstream 500 false Chr01: 5862528-5863027 Glycine max
Glyma.01G049900 1.0kb upstream 1.0kb upstream 1798 true Chr01: 5863028-5864825 Glycine max
Glyma.01G049900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5863826-5864825 Glycine max
Glyma.01G049900 1.0kb downstream 1.0kb downstream 1798 true Chr01: 5862028-5863825 Glycine max
Glyma.01G049900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5862028-5863027 Glycine max
Glyma.01G049900 2.0kb upstream 2.0kb upstream 2798 true Chr01: 5863028-5865825 Glycine max
Glyma.01G049900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5863826-5865825 Glycine max
Glyma.01G049900 2.0kb downstream 2.0kb downstream 2798 true Chr01: 5861028-5863825 Glycine max
Glyma.01G049900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5861028-5863027 Glycine max
Glyma.01G049900 5.0kb upstream 5.0kb upstream 5798 true Chr01: 5863028-5868825 Glycine max
Glyma.01G049900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5863826-5868825 Glycine max
Glyma.01G049900 5.0kb downstream 5.0kb downstream 5798 true Chr01: 5858028-5863825 Glycine max
Glyma.01G049900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5858028-5863027 Glycine max
Glyma.01G049900 10.0kb upstream 10.0kb upstream 10798 true Chr01: 5863028-5873825 Glycine max
Glyma.01G049900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5863826-5873825 Glycine max
Glyma.01G049900 10.0kb downstream 10.0kb downstream 10798 true Chr01: 5853028-5863825 Glycine max
Glyma.01G049900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5853028-5863027 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308705 5265 Fabidae View MSA
124067504 5270 Rosid View MSA
123741152 5271 Pentapetalae View MSA
122793489 5272 Eudicot View MSA
122047592 5273 Angiosperm View MSA
121347961 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.79854 0.0 21.6982   High
cufflinks 6.1038 0.0 19.8035    
cufflinks 3.80887 0.0 13.1638    
cufflinks 5.64493 0.0 18.4971    
cufflinks 3.86791 0.0 13.157    
cufflinks 2.64256 0.0 9.35644   Low
cufflinks 4.19613 0.0 14.1775    
cufflinks 5.34611 0.0 17.5947    
cufflinks 4.20751 0.0 14.2471    
cufflinks 2.468        
cufflinks 2.035        
cufflinks 3.954        
cufflinks 1.841       Low
cufflinks 2.025        
cufflinks 1.399       Low
cufflinks 5.409       High
cufflinks 3.261        
cufflinks 4.418        
cufflinks 4.418        
cufflinks 4.568        
cufflinks 1.993        
cufflinks 6.047       High
cufflinks 6.57       High
cufflinks 1.954        
cufflinks 5.166       High
cufflinks 2.444        

0 Strain