Gene : Glyma.01G049100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31499:SF11 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  491
Name:  ? Glyma.01G049100 Secondary Identifier:  ? PAC:30541549
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G049100 0.5kb upstream 0.5kb upstream 2925 true Chr01: 5717569-5720493 Glycine max
Glyma.01G049100 0.5kb upstream 0.5kb upstream 500 false Chr01: 5719994-5720493 Glycine max
Glyma.01G049100 0.5kb downstream 0.5kb downstream 2925 true Chr01: 5717069-5719993 Glycine max
Glyma.01G049100 0.5kb downstream 0.5kb downstream 500 false Chr01: 5717069-5717568 Glycine max
Glyma.01G049100 1.0kb upstream 1.0kb upstream 3425 true Chr01: 5717569-5720993 Glycine max
Glyma.01G049100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5719994-5720993 Glycine max
Glyma.01G049100 1.0kb downstream 1.0kb downstream 3425 true Chr01: 5716569-5719993 Glycine max
Glyma.01G049100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5716569-5717568 Glycine max
Glyma.01G049100 2.0kb upstream 2.0kb upstream 4425 true Chr01: 5717569-5721993 Glycine max
Glyma.01G049100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5719994-5721993 Glycine max
Glyma.01G049100 2.0kb downstream 2.0kb downstream 4425 true Chr01: 5715569-5719993 Glycine max
Glyma.01G049100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5715569-5717568 Glycine max
Glyma.01G049100 5.0kb upstream 5.0kb upstream 7425 true Chr01: 5717569-5724993 Glycine max
Glyma.01G049100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5719994-5724993 Glycine max
Glyma.01G049100 5.0kb downstream 5.0kb downstream 7425 true Chr01: 5712569-5719993 Glycine max
Glyma.01G049100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5712569-5717568 Glycine max
Glyma.01G049100 10.0kb upstream 10.0kb upstream 12425 true Chr01: 5717569-5729993 Glycine max
Glyma.01G049100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5719994-5729993 Glycine max
Glyma.01G049100 10.0kb downstream 10.0kb downstream 12425 true Chr01: 5707569-5719993 Glycine max
Glyma.01G049100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5707569-5717568 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791710 5273 Angiosperm View MSA
122309640 5265 Fabidae View MSA
124067697 5270 Rosid View MSA
123742453 5271 Pentapetalae View MSA
122786457 5272 Eudicot View MSA
123428935 5275 Viridiplantae View MSA
121350891 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.52516 0.0 13.5216    
cufflinks 7.65871 0.0 27.9913    
cufflinks 2.06353 0.0 9.52472    
cufflinks 5.14034 0.0 17.6356    
cufflinks 2.80701 0.0 11.8186    
cufflinks 1.12052 0.0 4.53635   Low
cufflinks 3.20994 0.0 12.6997    
cufflinks 9.97336 0.0 35.1067   High
cufflinks 7.70553 0.0 28.3343    
cufflinks 2.266        
cufflinks 0.735        
cufflinks 1.139        
cufflinks 1.462        
cufflinks 0.835        
cufflinks 2.479        
cufflinks 2.938        
cufflinks 0.785        
cufflinks 0.736        
cufflinks 3.408       High
cufflinks 3.136       High
cufflinks 0.657       Low
cufflinks 3.113       High
cufflinks 3.321       High
cufflinks 0.371       Low
cufflinks 2.603        
cufflinks 0.816        

0 Strain