Gene : Glyma.01G047700 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER Genomic Order:  477
Name:  ? Glyma.01G047700 Secondary Identifier:  ? PAC:30541566
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G047700 0.5kb upstream 0.5kb upstream 5060 true Chr01: 5549106-5554165 Glycine max
Glyma.01G047700 0.5kb upstream 0.5kb upstream 500 false Chr01: 5549106-5549605 Glycine max
Glyma.01G047700 0.5kb downstream 0.5kb downstream 5060 true Chr01: 5549606-5554665 Glycine max
Glyma.01G047700 0.5kb downstream 0.5kb downstream 500 false Chr01: 5554166-5554665 Glycine max
Glyma.01G047700 1.0kb upstream 1.0kb upstream 5560 true Chr01: 5548606-5554165 Glycine max
Glyma.01G047700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5548606-5549605 Glycine max
Glyma.01G047700 1.0kb downstream 1.0kb downstream 5560 true Chr01: 5549606-5555165 Glycine max
Glyma.01G047700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5554166-5555165 Glycine max
Glyma.01G047700 2.0kb upstream 2.0kb upstream 6560 true Chr01: 5547606-5554165 Glycine max
Glyma.01G047700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5547606-5549605 Glycine max
Glyma.01G047700 2.0kb downstream 2.0kb downstream 6560 true Chr01: 5549606-5556165 Glycine max
Glyma.01G047700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5554166-5556165 Glycine max
Glyma.01G047700 5.0kb upstream 5.0kb upstream 9560 true Chr01: 5544606-5554165 Glycine max
Glyma.01G047700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5544606-5549605 Glycine max
Glyma.01G047700 5.0kb downstream 5.0kb downstream 9560 true Chr01: 5549606-5559165 Glycine max
Glyma.01G047700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5554166-5559165 Glycine max
Glyma.01G047700 10.0kb upstream 10.0kb upstream 14560 true Chr01: 5539606-5554165 Glycine max
Glyma.01G047700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5539606-5549605 Glycine max
Glyma.01G047700 10.0kb downstream 10.0kb downstream 14560 true Chr01: 5549606-5564165 Glycine max
Glyma.01G047700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5554166-5564165 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313132 5265 Fabidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.8587 0.0 48.0192    
cufflinks 15.6516 0.0 42.4181    
cufflinks 45.4106 0.0 122.686 High High
cufflinks 13.7765 0.0 37.5773    
cufflinks 14.429 0.0 39.1034    
cufflinks 50.0231 0.0 136.529 High High
cufflinks 8.55649 0.0 24.2938   Low
cufflinks 19.8774 0.0 53.2844    
cufflinks 15.356 0.0 41.5609    
cufflinks 5.103        
cufflinks 22.982     High High
cufflinks 5.615        
cufflinks 3.996        
cufflinks 2.449       Low
cufflinks 9.526     High  
cufflinks 6.136        
cufflinks 9.654     High  
cufflinks 4.074        
cufflinks 3.603       Low
cufflinks 6.175        
cufflinks 16.693     High High
cufflinks 5.517        
cufflinks 5.04        
cufflinks 19.321     High High
cufflinks 5.716        
cufflinks 15.267     High High

0 Strain