Gene : Glyma.18G248600 G. max Wm82.a2.v1
Defline:  (1 of 6) KOG2401 - Predicted MutS-related protein involved in mismatch repair Genomic Order:  2486
Name:  ? Glyma.18G248600 Secondary Identifier:  ? PAC:30557342
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G248600 0.5kb upstream 0.5kb upstream 5517 true Chr18: 53551636-53557152 Glycine max
Glyma.18G248600 0.5kb upstream 0.5kb upstream 500 false Chr18: 53551636-53552135 Glycine max
Glyma.18G248600 0.5kb downstream 0.5kb downstream 5517 true Chr18: 53552136-53557652 Glycine max
Glyma.18G248600 0.5kb downstream 0.5kb downstream 500 false Chr18: 53557153-53557652 Glycine max
Glyma.18G248600 1.0kb upstream 1.0kb upstream 6017 true Chr18: 53551136-53557152 Glycine max
Glyma.18G248600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 53551136-53552135 Glycine max
Glyma.18G248600 1.0kb downstream 1.0kb downstream 6017 true Chr18: 53552136-53558152 Glycine max
Glyma.18G248600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 53557153-53558152 Glycine max
Glyma.18G248600 2.0kb upstream 2.0kb upstream 7017 true Chr18: 53550136-53557152 Glycine max
Glyma.18G248600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 53550136-53552135 Glycine max
Glyma.18G248600 2.0kb downstream 2.0kb downstream 7017 true Chr18: 53552136-53559152 Glycine max
Glyma.18G248600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 53557153-53559152 Glycine max
Glyma.18G248600 5.0kb upstream 5.0kb upstream 10017 true Chr18: 53547136-53557152 Glycine max
Glyma.18G248600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 53547136-53552135 Glycine max
Glyma.18G248600 5.0kb downstream 5.0kb downstream 10017 true Chr18: 53552136-53562152 Glycine max
Glyma.18G248600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 53557153-53562152 Glycine max
Glyma.18G248600 10.0kb upstream 10.0kb upstream 15017 true Chr18: 53542136-53557152 Glycine max
Glyma.18G248600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 53542136-53552135 Glycine max
Glyma.18G248600 10.0kb downstream 10.0kb downstream 15017 true Chr18: 53552136-53567152 Glycine max
Glyma.18G248600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 53557153-53567152 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026433 5273 Angiosperm View MSA
122304355 5265 Fabidae View MSA
124066678 5270 Rosid View MSA
123738985 5271 Pentapetalae View MSA
122791579 5272 Eudicot View MSA
121344234 5274 Embryophyte View MSA
123380011 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9889 0.0 41.4298   High
cufflinks 3.36907 0.0 13.1035   Low
cufflinks 16.0998 0.0 57.4112   High
cufflinks 6.69618 0.0 25.8734    
cufflinks 5.36552 0.0 18.3484    
cufflinks 7.48814 0.0 27.4813    
cufflinks 3.41288 0.0 13.3777   Low
cufflinks 6.5828 0.0 25.3479    
cufflinks 7.92961 0.0 25.7312    
cufflinks 0.621       Low
cufflinks 2.011       High
cufflinks 1.969       High
cufflinks 0.841        
cufflinks 0.883        
cufflinks 2.042       High
cufflinks 0.922        
cufflinks 1.062        
cufflinks 1.149        
cufflinks 0.614       Low
cufflinks 1.29        
cufflinks 1.789       High
cufflinks 1.253        
cufflinks 1.164        
cufflinks 1.867       High
cufflinks 1.192        
cufflinks 1.288        

0 Strain