Gene : Glyma.18G288100 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2881
Name:  ? Glyma.18G288100 Secondary Identifier:  ? PAC:30555046
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G288100 0.5kb upstream 0.5kb upstream 3708 true Chr18: 56790825-56794532 Glycine max
Glyma.18G288100 0.5kb upstream 0.5kb upstream 500 false Chr18: 56790825-56791324 Glycine max
Glyma.18G288100 0.5kb downstream 0.5kb downstream 3708 true Chr18: 56791325-56795032 Glycine max
Glyma.18G288100 0.5kb downstream 0.5kb downstream 500 false Chr18: 56794533-56795032 Glycine max
Glyma.18G288100 1.0kb upstream 1.0kb upstream 4208 true Chr18: 56790325-56794532 Glycine max
Glyma.18G288100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 56790325-56791324 Glycine max
Glyma.18G288100 1.0kb downstream 1.0kb downstream 4208 true Chr18: 56791325-56795532 Glycine max
Glyma.18G288100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 56794533-56795532 Glycine max
Glyma.18G288100 2.0kb upstream 2.0kb upstream 5208 true Chr18: 56789325-56794532 Glycine max
Glyma.18G288100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 56789325-56791324 Glycine max
Glyma.18G288100 2.0kb downstream 2.0kb downstream 5208 true Chr18: 56791325-56796532 Glycine max
Glyma.18G288100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 56794533-56796532 Glycine max
Glyma.18G288100 5.0kb upstream 5.0kb upstream 8208 true Chr18: 56786325-56794532 Glycine max
Glyma.18G288100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 56786325-56791324 Glycine max
Glyma.18G288100 5.0kb downstream 5.0kb downstream 8208 true Chr18: 56791325-56799532 Glycine max
Glyma.18G288100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 56794533-56799532 Glycine max
Glyma.18G288100 10.0kb upstream 10.0kb upstream 13208 true Chr18: 56781325-56794532 Glycine max
Glyma.18G288100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 56781325-56791324 Glycine max
Glyma.18G288100 10.0kb downstream 10.0kb downstream 13208 true Chr18: 56791325-56804532 Glycine max
Glyma.18G288100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 56794533-56804532 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311756 5265 Fabidae View MSA
124050226 5270 Rosid View MSA
123741335 5271 Pentapetalae View MSA
122792200 5272 Eudicot View MSA
122050004 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.15993 0.0 0.608221 Low  
cufflinks 0.209582 0.0 0.787179 Low  
cufflinks 0.0609989 0.0 0.24076 Low Low
cufflinks 0.147916 0.0 0.564055 Low  
cufflinks 0.213507 0.0 0.802292 Low  
cufflinks 0.0806701 0.0 0.315739 Low Low
cufflinks 0.29023 0.0 1.07438   High
cufflinks 0.113052 0.0 0.436161 Low  
cufflinks 0.266188 0.0 0.988543   High
cufflinks 0.045     Low  
cufflinks 0.024     Low Low
cufflinks 0.158        
cufflinks 0.186        
cufflinks 0.262       High
cufflinks 0.04     Low  
cufflinks 0.115        
cufflinks 0.061     Low  
cufflinks 0.221        
cufflinks 0.178        
cufflinks 0.123        
cufflinks 0.007     Low Low
cufflinks 0.157        
cufflinks 0.225        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.138        
cufflinks 0.049     Low  

0 Strain