Gene : Glyma.18G291800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11538:SF41 - PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  2918
Name:  ? Glyma.18G291800 Secondary Identifier:  ? PAC:30555866
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G291800 0.5kb upstream 0.5kb upstream 10387 true Chr18: 57037698-57048084 Glycine max
Glyma.18G291800 0.5kb upstream 0.5kb upstream 500 false Chr18: 57037698-57038197 Glycine max
Glyma.18G291800 0.5kb downstream 0.5kb downstream 10387 true Chr18: 57038198-57048584 Glycine max
Glyma.18G291800 0.5kb downstream 0.5kb downstream 500 false Chr18: 57048085-57048584 Glycine max
Glyma.18G291800 1.0kb upstream 1.0kb upstream 10887 true Chr18: 57037198-57048084 Glycine max
Glyma.18G291800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 57037198-57038197 Glycine max
Glyma.18G291800 1.0kb downstream 1.0kb downstream 10887 true Chr18: 57038198-57049084 Glycine max
Glyma.18G291800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 57048085-57049084 Glycine max
Glyma.18G291800 2.0kb upstream 2.0kb upstream 11887 true Chr18: 57036198-57048084 Glycine max
Glyma.18G291800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 57036198-57038197 Glycine max
Glyma.18G291800 2.0kb downstream 2.0kb downstream 11887 true Chr18: 57038198-57050084 Glycine max
Glyma.18G291800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 57048085-57050084 Glycine max
Glyma.18G291800 5.0kb upstream 5.0kb upstream 14887 true Chr18: 57033198-57048084 Glycine max
Glyma.18G291800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 57033198-57038197 Glycine max
Glyma.18G291800 5.0kb downstream 5.0kb downstream 14887 true Chr18: 57038198-57053084 Glycine max
Glyma.18G291800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 57048085-57053084 Glycine max
Glyma.18G291800 10.0kb upstream 10.0kb upstream 19887 true Chr18: 57028198-57048084 Glycine max
Glyma.18G291800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 57028198-57038197 Glycine max
Glyma.18G291800 10.0kb downstream 10.0kb downstream 19887 true Chr18: 57038198-57058084 Glycine max
Glyma.18G291800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 57048085-57058084 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299382 5265 Fabidae View MSA
124068878 5270 Rosid View MSA
123737426 5271 Pentapetalae View MSA
122793122 5272 Eudicot View MSA
122044413 5273 Angiosperm View MSA
121344364 5274 Embryophyte View MSA
123424081 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.9887 0.0 64.1971   High
cufflinks 7.72152 0.0 28.6377    
cufflinks 6.60761 0.0 27.2448    
cufflinks 10.2268 0.0 36.2043    
cufflinks 4.84455 0.0 22.7562    
cufflinks 4.27113 0.0 19.8673   Low
cufflinks 5.53732 0.0 19.3636    
cufflinks 6.9513 0.0 22.8224    
cufflinks 6.32051 0.0 26.6965    
cufflinks 0.422        
cufflinks 0.126       Low
cufflinks 0.594        
cufflinks 0.424        
cufflinks 0.452        
cufflinks 0.182       Low
cufflinks 0.838        
cufflinks 0.241        
cufflinks 0.705        
cufflinks 0.58        
cufflinks 0.933       High
cufflinks 0.176       Low
cufflinks 0.881       High
cufflinks 0.917       High
cufflinks 0.208       Low
cufflinks 0.898       High
cufflinks 0.204       Low

0 Strain