Gene : Glyma.02G033900 G. max Wm82.a2.v1
Defline:  (1 of 16) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  339
Name:  ? Glyma.02G033900 Secondary Identifier:  ? PAC:30506511
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BSUBPOLYAMSYN-PWY Glycine max pathologic  
Gmax POLYAMINSYN3-PWY Glycine max pathologic  
Gmax PWY-7528 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G033900 0.5kb upstream 0.5kb upstream 3677 true Chr02: 3141921-3145597 Glycine max
Glyma.02G033900 0.5kb upstream 0.5kb upstream 500 false Chr02: 3145098-3145597 Glycine max
Glyma.02G033900 0.5kb downstream 0.5kb downstream 3677 true Chr02: 3141421-3145097 Glycine max
Glyma.02G033900 0.5kb downstream 0.5kb downstream 500 false Chr02: 3141421-3141920 Glycine max
Glyma.02G033900 1.0kb upstream 1.0kb upstream 4177 true Chr02: 3141921-3146097 Glycine max
Glyma.02G033900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3145098-3146097 Glycine max
Glyma.02G033900 1.0kb downstream 1.0kb downstream 4177 true Chr02: 3140921-3145097 Glycine max
Glyma.02G033900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3140921-3141920 Glycine max
Glyma.02G033900 2.0kb upstream 2.0kb upstream 5177 true Chr02: 3141921-3147097 Glycine max
Glyma.02G033900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3145098-3147097 Glycine max
Glyma.02G033900 2.0kb downstream 2.0kb downstream 5177 true Chr02: 3139921-3145097 Glycine max
Glyma.02G033900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3139921-3141920 Glycine max
Glyma.02G033900 5.0kb upstream 5.0kb upstream 8177 true Chr02: 3141921-3150097 Glycine max
Glyma.02G033900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3145098-3150097 Glycine max
Glyma.02G033900 5.0kb downstream 5.0kb downstream 8177 true Chr02: 3136921-3145097 Glycine max
Glyma.02G033900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3136921-3141920 Glycine max
Glyma.02G033900 10.0kb upstream 10.0kb upstream 13177 true Chr02: 3141921-3155097 Glycine max
Glyma.02G033900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3145098-3155097 Glycine max
Glyma.02G033900 10.0kb downstream 10.0kb downstream 13177 true Chr02: 3131921-3145097 Glycine max
Glyma.02G033900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3131921-3141920 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.7979 0.0 63.5084 High  
cufflinks 32.9666 0.0 88.2407 High  
cufflinks 28.1568 0.0 75.1715 High  
cufflinks 20.4631 0.0 54.7321 High Low
cufflinks 50.8289 0.0 138.956 High High
cufflinks 58.1308 0.0 160.835 High High
cufflinks 47.0137 0.0 127.768 High  
cufflinks 25.5072 0.0 68.05 High  
cufflinks 33.2756 0.0 89.0955 High  
cufflinks 8.615     High  
cufflinks 1.949       Low
cufflinks 14.888     High  
cufflinks 35.027     High High
cufflinks 45.631     High High
cufflinks 2.741       Low
cufflinks 9.746     High  
cufflinks 5.574        
cufflinks 12.037     High  
cufflinks 17.264     High  
cufflinks 7.357     High  
cufflinks 3.708        
cufflinks 8.434     High  
cufflinks 15.677     High  
cufflinks 2.748       Low
cufflinks 9.996     High  
cufflinks 5.583        

0 Strain