Gene : Glyma.02G042000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23416:SF63 - SERINE ACETYLTRANSFERASE 2-RELATED Genomic Order:  420
Name:  ? Glyma.02G042000 Secondary Identifier:  ? PAC:30510126
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G042000 0.5kb upstream 0.5kb upstream 4965 true Chr02: 3954026-3958990 Glycine max
Glyma.02G042000 0.5kb upstream 0.5kb upstream 500 false Chr02: 3958491-3958990 Glycine max
Glyma.02G042000 0.5kb downstream 0.5kb downstream 4965 true Chr02: 3953526-3958490 Glycine max
Glyma.02G042000 0.5kb downstream 0.5kb downstream 500 false Chr02: 3953526-3954025 Glycine max
Glyma.02G042000 1.0kb upstream 1.0kb upstream 5465 true Chr02: 3954026-3959490 Glycine max
Glyma.02G042000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3958491-3959490 Glycine max
Glyma.02G042000 1.0kb downstream 1.0kb downstream 5465 true Chr02: 3953026-3958490 Glycine max
Glyma.02G042000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3953026-3954025 Glycine max
Glyma.02G042000 2.0kb upstream 2.0kb upstream 6465 true Chr02: 3954026-3960490 Glycine max
Glyma.02G042000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3958491-3960490 Glycine max
Glyma.02G042000 2.0kb downstream 2.0kb downstream 6465 true Chr02: 3952026-3958490 Glycine max
Glyma.02G042000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3952026-3954025 Glycine max
Glyma.02G042000 5.0kb upstream 5.0kb upstream 9465 true Chr02: 3954026-3963490 Glycine max
Glyma.02G042000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3958491-3963490 Glycine max
Glyma.02G042000 5.0kb downstream 5.0kb downstream 9465 true Chr02: 3949026-3958490 Glycine max
Glyma.02G042000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3949026-3954025 Glycine max
Glyma.02G042000 10.0kb upstream 10.0kb upstream 14465 true Chr02: 3954026-3968490 Glycine max
Glyma.02G042000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3958491-3968490 Glycine max
Glyma.02G042000 10.0kb downstream 10.0kb downstream 14465 true Chr02: 3944026-3958490 Glycine max
Glyma.02G042000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3944026-3954025 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121617982 5273 Angiosperm View MSA
122254638 5265 Fabidae View MSA
123996709 5270 Rosid View MSA
123571133 5271 Pentapetalae View MSA
122605863 5272 Eudicot View MSA
121349787 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.436279 0.0 2.76539    
cufflinks 0.222702 0.0 1.55352    
cufflinks 0.348787 0.0 2.26168    
cufflinks 5.58827 0.0 19.3913    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0245789 0.0 0.10815 Low Low
cufflinks 23.8417 0.0 73.9984 High High
cufflinks 0.024     Low  
cufflinks 0.129        
cufflinks 0.076     Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.043     High High
cufflinks 0.019     Low  
cufflinks 0.003     Low Low
cufflinks 0.087     Low  
cufflinks 0.092     Low  
cufflinks 0.002     Low Low
cufflinks 0.048     Low  
cufflinks 0.014     Low  
cufflinks 0.006     Low  
cufflinks 0.032     Low  
cufflinks 0.016     Low  
cufflinks 0.021     Low  

0 Strain