Gene : Glyma.02G054800 G. max Wm82.a2.v1
Defline:  (1 of 3) 5.3.1.16 - 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase / Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Genomic Order:  548
Name:  ? Glyma.02G054800 Secondary Identifier:  ? PAC:30511047
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax HISTSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G054800 0.5kb upstream 0.5kb upstream 9334 true Chr02: 4956488-4965821 Glycine max
Glyma.02G054800 0.5kb upstream 0.5kb upstream 500 false Chr02: 4965322-4965821 Glycine max
Glyma.02G054800 0.5kb downstream 0.5kb downstream 9334 true Chr02: 4955988-4965321 Glycine max
Glyma.02G054800 0.5kb downstream 0.5kb downstream 500 false Chr02: 4955988-4956487 Glycine max
Glyma.02G054800 1.0kb upstream 1.0kb upstream 9834 true Chr02: 4956488-4966321 Glycine max
Glyma.02G054800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4965322-4966321 Glycine max
Glyma.02G054800 1.0kb downstream 1.0kb downstream 9834 true Chr02: 4955488-4965321 Glycine max
Glyma.02G054800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4955488-4956487 Glycine max
Glyma.02G054800 2.0kb upstream 2.0kb upstream 10834 true Chr02: 4956488-4967321 Glycine max
Glyma.02G054800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4965322-4967321 Glycine max
Glyma.02G054800 2.0kb downstream 2.0kb downstream 10834 true Chr02: 4954488-4965321 Glycine max
Glyma.02G054800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4954488-4956487 Glycine max
Glyma.02G054800 5.0kb upstream 5.0kb upstream 13834 true Chr02: 4956488-4970321 Glycine max
Glyma.02G054800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4965322-4970321 Glycine max
Glyma.02G054800 5.0kb downstream 5.0kb downstream 13834 true Chr02: 4951488-4965321 Glycine max
Glyma.02G054800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4951488-4956487 Glycine max
Glyma.02G054800 10.0kb upstream 10.0kb upstream 18834 true Chr02: 4956488-4975321 Glycine max
Glyma.02G054800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4965322-4975321 Glycine max
Glyma.02G054800 10.0kb downstream 10.0kb downstream 18834 true Chr02: 4946488-4965321 Glycine max
Glyma.02G054800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4946488-4956487 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121609258 5273 Angiosperm Singleton cluster - no MSA
122241426 5265 Fabidae Singleton cluster - no MSA
123986292 5270 Rosid Singleton cluster - no MSA
123561654 5271 Pentapetalae Singleton cluster - no MSA
122596442 5272 Eudicot Singleton cluster - no MSA
120881516 5274 Embryophyte Singleton cluster - no MSA
122922367 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.6661 0.0 20.5603    
cufflinks 13.9109 0.0 37.2538    
cufflinks 5.59056 0.0 15.2047   Low
cufflinks 9.45582 0.0 25.2422    
cufflinks 10.603 0.0 28.2875    
cufflinks 13.0343 0.0 34.8619    
cufflinks 17.3679 0.0 46.9045   High
cufflinks 8.88856 0.0 23.7471    
cufflinks 8.93613 0.0 23.874    
cufflinks 6.902       High
cufflinks 3.192        
cufflinks 3.398        
cufflinks 4.239        
cufflinks 3.8        
cufflinks 1.376       Low
cufflinks 3.698        
cufflinks 10.739     High High
cufflinks 4.401        
cufflinks 4.386        
cufflinks 2.971        
cufflinks 1.924       Low
cufflinks 3.527        
cufflinks 4.947        
cufflinks 3.76        
cufflinks 3.029        
cufflinks 4.39        

0 Strain