Gene : Glyma.02G078500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22603:SF39 - CHOLINE KINASE 1-RELATED Genomic Order:  785
Name:  ? Glyma.02G078500 Secondary Identifier:  ? PAC:30509948
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3385 Glycine max pathologic  
Gmax PWY4FS-6 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G078500 0.5kb upstream 0.5kb upstream 6837 true Chr02: 6764375-6771211 Glycine max
Glyma.02G078500 0.5kb upstream 0.5kb upstream 500 false Chr02: 6764375-6764874 Glycine max
Glyma.02G078500 0.5kb downstream 0.5kb downstream 6837 true Chr02: 6764875-6771711 Glycine max
Glyma.02G078500 0.5kb downstream 0.5kb downstream 500 false Chr02: 6771212-6771711 Glycine max
Glyma.02G078500 1.0kb upstream 1.0kb upstream 7337 true Chr02: 6763875-6771211 Glycine max
Glyma.02G078500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6763875-6764874 Glycine max
Glyma.02G078500 1.0kb downstream 1.0kb downstream 7337 true Chr02: 6764875-6772211 Glycine max
Glyma.02G078500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6771212-6772211 Glycine max
Glyma.02G078500 2.0kb upstream 2.0kb upstream 8337 true Chr02: 6762875-6771211 Glycine max
Glyma.02G078500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6762875-6764874 Glycine max
Glyma.02G078500 2.0kb downstream 2.0kb downstream 8337 true Chr02: 6764875-6773211 Glycine max
Glyma.02G078500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6771212-6773211 Glycine max
Glyma.02G078500 5.0kb upstream 5.0kb upstream 11337 true Chr02: 6759875-6771211 Glycine max
Glyma.02G078500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6759875-6764874 Glycine max
Glyma.02G078500 5.0kb downstream 5.0kb downstream 11337 true Chr02: 6764875-6776211 Glycine max
Glyma.02G078500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6771212-6776211 Glycine max
Glyma.02G078500 10.0kb upstream 10.0kb upstream 16337 true Chr02: 6754875-6771211 Glycine max
Glyma.02G078500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6754875-6764874 Glycine max
Glyma.02G078500 10.0kb downstream 10.0kb downstream 16337 true Chr02: 6764875-6781211 Glycine max
Glyma.02G078500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6771212-6781211 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311650 5265 Fabidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.8632 0.0 209.063 High  
cufflinks 12.976 0.0 45.2967   Low
cufflinks 108.872 0.0 432.962 High High
cufflinks 26.4289 0.0 89.2749 High  
cufflinks 21.6093 0.0 72.9908 High  
cufflinks 81.7255 0.0 290.32 High High
cufflinks 21.3918 0.0 72.141    
cufflinks 51.1587 0.0 188.675 High  
cufflinks 30.466 0.0 104.038 High  
cufflinks 3.275        
cufflinks 6.716     High  
cufflinks 11.608     High High
cufflinks 3.839        
cufflinks 2.179       Low
cufflinks 4.115        
cufflinks 3.455        
cufflinks 12.917     High High
cufflinks 8.075     High  
cufflinks 2.856       Low
cufflinks 3.863        
cufflinks 9.607     High  
cufflinks 5.407        
cufflinks 5.714        
cufflinks 12.101     High High
cufflinks 3.602        
cufflinks 10.6     High High

0 Strain