Gene : Glyma.02G094400 G. max Wm82.a2.v1
Defline:  (1 of 40) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  944
Name:  ? Glyma.02G094400 Secondary Identifier:  ? PAC:30510246
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G094400 0.5kb upstream 0.5kb upstream 5874 true Chr02: 8456849-8462722 Glycine max
Glyma.02G094400 0.5kb upstream 0.5kb upstream 500 false Chr02: 8462223-8462722 Glycine max
Glyma.02G094400 0.5kb downstream 0.5kb downstream 5874 true Chr02: 8456349-8462222 Glycine max
Glyma.02G094400 0.5kb downstream 0.5kb downstream 500 false Chr02: 8456349-8456848 Glycine max
Glyma.02G094400 1.0kb upstream 1.0kb upstream 6374 true Chr02: 8456849-8463222 Glycine max
Glyma.02G094400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 8462223-8463222 Glycine max
Glyma.02G094400 1.0kb downstream 1.0kb downstream 6374 true Chr02: 8455849-8462222 Glycine max
Glyma.02G094400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 8455849-8456848 Glycine max
Glyma.02G094400 2.0kb upstream 2.0kb upstream 7374 true Chr02: 8456849-8464222 Glycine max
Glyma.02G094400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 8462223-8464222 Glycine max
Glyma.02G094400 2.0kb downstream 2.0kb downstream 7374 true Chr02: 8454849-8462222 Glycine max
Glyma.02G094400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 8454849-8456848 Glycine max
Glyma.02G094400 5.0kb upstream 5.0kb upstream 10374 true Chr02: 8456849-8467222 Glycine max
Glyma.02G094400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 8462223-8467222 Glycine max
Glyma.02G094400 5.0kb downstream 5.0kb downstream 10374 true Chr02: 8451849-8462222 Glycine max
Glyma.02G094400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 8451849-8456848 Glycine max
Glyma.02G094400 10.0kb upstream 10.0kb upstream 15374 true Chr02: 8456849-8472222 Glycine max
Glyma.02G094400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 8462223-8472222 Glycine max
Glyma.02G094400 10.0kb downstream 10.0kb downstream 15374 true Chr02: 8446849-8462222 Glycine max
Glyma.02G094400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 8446849-8456848 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122241535 5265 Fabidae Singleton cluster - no MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9343 0.0 48.652    
cufflinks 10.6359 0.0 39.9379    
cufflinks 28.2824 0.0 112.551 High High
cufflinks 12.687 0.0 55.178    
cufflinks 9.11775 0.0 37.8002    
cufflinks 8.19365 0.0 31.4184   Low
cufflinks 12.9295 0.0 51.8846    
cufflinks 16.7357 0.0 72.6876    
cufflinks 10.677 0.0 43.3094    
cufflinks 0.844       Low
cufflinks 0.851       Low
cufflinks 1.866       High
cufflinks 0.956        
cufflinks 0.934        
cufflinks 1.078        
cufflinks 1.703       High
cufflinks 0.752       Low
cufflinks 1.138        
cufflinks 1.3        
cufflinks 1.575        
cufflinks 1.999       High
cufflinks 1.436        
cufflinks 0.844       Low
cufflinks 1.366        
cufflinks 1.279        
cufflinks 1.424        

0 Strain