Gene : Glyma.02G100600 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR30372 - LIPID-A-DISACCHARIDE SYNTHASE Genomic Order:  1006
Name:  ? Glyma.02G100600 Secondary Identifier:  ? PAC:30508555
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax NAGLIPASYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G100600 0.5kb upstream 0.5kb upstream 5993 true Chr02: 9462376-9468368 Glycine max
Glyma.02G100600 0.5kb upstream 0.5kb upstream 500 false Chr02: 9467869-9468368 Glycine max
Glyma.02G100600 0.5kb downstream 0.5kb downstream 5993 true Chr02: 9461876-9467868 Glycine max
Glyma.02G100600 0.5kb downstream 0.5kb downstream 500 false Chr02: 9461876-9462375 Glycine max
Glyma.02G100600 1.0kb upstream 1.0kb upstream 6493 true Chr02: 9462376-9468868 Glycine max
Glyma.02G100600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9467869-9468868 Glycine max
Glyma.02G100600 1.0kb downstream 1.0kb downstream 6493 true Chr02: 9461376-9467868 Glycine max
Glyma.02G100600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9461376-9462375 Glycine max
Glyma.02G100600 2.0kb upstream 2.0kb upstream 7493 true Chr02: 9462376-9469868 Glycine max
Glyma.02G100600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9467869-9469868 Glycine max
Glyma.02G100600 2.0kb downstream 2.0kb downstream 7493 true Chr02: 9460376-9467868 Glycine max
Glyma.02G100600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9460376-9462375 Glycine max
Glyma.02G100600 5.0kb upstream 5.0kb upstream 10493 true Chr02: 9462376-9472868 Glycine max
Glyma.02G100600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9467869-9472868 Glycine max
Glyma.02G100600 5.0kb downstream 5.0kb downstream 10493 true Chr02: 9457376-9467868 Glycine max
Glyma.02G100600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9457376-9462375 Glycine max
Glyma.02G100600 10.0kb upstream 10.0kb upstream 15493 true Chr02: 9462376-9477868 Glycine max
Glyma.02G100600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9467869-9477868 Glycine max
Glyma.02G100600 10.0kb downstream 10.0kb downstream 15493 true Chr02: 9452376-9467868 Glycine max
Glyma.02G100600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9452376-9462375 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303086 5265 Fabidae View MSA
124067392 5270 Rosid View MSA
123747166 5271 Pentapetalae View MSA
122791278 5272 Eudicot View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.13062 0.0 14.3927   High
cufflinks 3.5239 0.0 10.3282    
cufflinks 3.60949 0.0 10.5254    
cufflinks 2.70383 0.0 8.20609    
cufflinks 2.69115 0.0 8.1908    
cufflinks 3.39135 0.0 9.98782    
cufflinks 1.73037 0.0 5.61126   Low
cufflinks 2.22358 0.0 6.93627    
cufflinks 3.42633 0.0 10.0796    
cufflinks 0.952       Low
cufflinks 1.59        
cufflinks 1.704        
cufflinks 1.248       Low
cufflinks 1.434        
cufflinks 1.855        
cufflinks 2.277        
cufflinks 1.329        
cufflinks 1.598        
cufflinks 2.009        
cufflinks 2.723       High
cufflinks 1.563        
cufflinks 2.682       High
cufflinks 3.11       High
cufflinks 1.775        
cufflinks 2.405        
cufflinks 1.745        

0 Strain