Gene : Glyma.18G276500 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2765
Name:  ? Glyma.18G276500 Secondary Identifier:  ? PAC:30556813
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G276500 0.5kb upstream 0.5kb upstream 4417 true Chr18: 55861270-55865686 Glycine max
Glyma.18G276500 0.5kb upstream 0.5kb upstream 500 false Chr18: 55861270-55861769 Glycine max
Glyma.18G276500 0.5kb downstream 0.5kb downstream 4417 true Chr18: 55861770-55866186 Glycine max
Glyma.18G276500 0.5kb downstream 0.5kb downstream 500 false Chr18: 55865687-55866186 Glycine max
Glyma.18G276500 1.0kb upstream 1.0kb upstream 4917 true Chr18: 55860770-55865686 Glycine max
Glyma.18G276500 1.0kb upstream 1.0kb upstream 1000 false Chr18: 55860770-55861769 Glycine max
Glyma.18G276500 1.0kb downstream 1.0kb downstream 4917 true Chr18: 55861770-55866686 Glycine max
Glyma.18G276500 1.0kb downstream 1.0kb downstream 1000 false Chr18: 55865687-55866686 Glycine max
Glyma.18G276500 2.0kb upstream 2.0kb upstream 5917 true Chr18: 55859770-55865686 Glycine max
Glyma.18G276500 2.0kb upstream 2.0kb upstream 2000 false Chr18: 55859770-55861769 Glycine max
Glyma.18G276500 2.0kb downstream 2.0kb downstream 5917 true Chr18: 55861770-55867686 Glycine max
Glyma.18G276500 2.0kb downstream 2.0kb downstream 2000 false Chr18: 55865687-55867686 Glycine max
Glyma.18G276500 5.0kb upstream 5.0kb upstream 8917 true Chr18: 55856770-55865686 Glycine max
Glyma.18G276500 5.0kb upstream 5.0kb upstream 5000 false Chr18: 55856770-55861769 Glycine max
Glyma.18G276500 5.0kb downstream 5.0kb downstream 8917 true Chr18: 55861770-55870686 Glycine max
Glyma.18G276500 5.0kb downstream 5.0kb downstream 5000 false Chr18: 55865687-55870686 Glycine max
Glyma.18G276500 10.0kb upstream 10.0kb upstream 13917 true Chr18: 55851770-55865686 Glycine max
Glyma.18G276500 10.0kb upstream 10.0kb upstream 10000 false Chr18: 55851770-55861769 Glycine max
Glyma.18G276500 10.0kb downstream 10.0kb downstream 13917 true Chr18: 55861770-55875686 Glycine max
Glyma.18G276500 10.0kb downstream 10.0kb downstream 10000 false Chr18: 55865687-55875686 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302059 5265 Fabidae View MSA
124061005 5270 Rosid View MSA
123740775 5271 Pentapetalae View MSA
122785854 5272 Eudicot View MSA
122042693 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346514 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.53896 0.0 9.98166   High
cufflinks 3.1661 0.0 9.05102    
cufflinks 0.86766 0.0 2.93834   Low
cufflinks 2.94572 0.0 8.47996    
cufflinks 1.70546 0.0 5.29127    
cufflinks 1.09656 0.0 3.61344   Low
cufflinks 3.30525 0.0 9.39994    
cufflinks 2.4108 0.0 7.1265    
cufflinks 1.76124 0.0 5.43619    
cufflinks 1.842        
cufflinks 0.227       Low
cufflinks 1.864        
cufflinks 1.139        
cufflinks 1.294        
cufflinks 0.795        
cufflinks 2.559        
cufflinks 0.388       Low
cufflinks 2.139        
cufflinks 3.646       High
cufflinks 3.017        
cufflinks 0.322       Low
cufflinks 2.731        
cufflinks 2.893        
cufflinks 0.391       Low
cufflinks 2.7        
cufflinks 0.274       Low

0 Strain