Gene : Glyma.18G276600 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2766
Name:  ? Glyma.18G276600 Secondary Identifier:  ? PAC:30558765
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G276600 0.5kb upstream 0.5kb upstream 3848 true Chr18: 55866582-55870429 Glycine max
Glyma.18G276600 0.5kb upstream 0.5kb upstream 500 false Chr18: 55869930-55870429 Glycine max
Glyma.18G276600 0.5kb downstream 0.5kb downstream 3848 true Chr18: 55866082-55869929 Glycine max
Glyma.18G276600 0.5kb downstream 0.5kb downstream 500 false Chr18: 55866082-55866581 Glycine max
Glyma.18G276600 1.0kb upstream 1.0kb upstream 4348 true Chr18: 55866582-55870929 Glycine max
Glyma.18G276600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 55869930-55870929 Glycine max
Glyma.18G276600 1.0kb downstream 1.0kb downstream 4348 true Chr18: 55865582-55869929 Glycine max
Glyma.18G276600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 55865582-55866581 Glycine max
Glyma.18G276600 2.0kb upstream 2.0kb upstream 5348 true Chr18: 55866582-55871929 Glycine max
Glyma.18G276600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 55869930-55871929 Glycine max
Glyma.18G276600 2.0kb downstream 2.0kb downstream 5348 true Chr18: 55864582-55869929 Glycine max
Glyma.18G276600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 55864582-55866581 Glycine max
Glyma.18G276600 5.0kb upstream 5.0kb upstream 8348 true Chr18: 55866582-55874929 Glycine max
Glyma.18G276600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 55869930-55874929 Glycine max
Glyma.18G276600 5.0kb downstream 5.0kb downstream 8348 true Chr18: 55861582-55869929 Glycine max
Glyma.18G276600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 55861582-55866581 Glycine max
Glyma.18G276600 10.0kb upstream 10.0kb upstream 13348 true Chr18: 55866582-55879929 Glycine max
Glyma.18G276600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 55869930-55879929 Glycine max
Glyma.18G276600 10.0kb downstream 10.0kb downstream 13348 true Chr18: 55856582-55869929 Glycine max
Glyma.18G276600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 55856582-55866581 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310803 5265 Fabidae View MSA
124068109 5270 Rosid View MSA
123738299 5271 Pentapetalae View MSA
122788769 5272 Eudicot View MSA
122047238 5273 Angiosperm View MSA
121310712 5274 Embryophyte View MSA
123348130 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.84637 0.0 10.3459   High
cufflinks 1.63373 0.0 7.04457    
cufflinks 1.1778 0.0 5.52773    
cufflinks 0.780928 0.0 4.15288    
cufflinks 0.57706 0.0 2.52334   Low
cufflinks 0.538329 0.0 2.34858   Low
cufflinks 1.359 0.0 6.27383    
cufflinks 0.874532 0.0 4.53146    
cufflinks 0.924676 0.0 3.66724    
cufflinks 0.395        
cufflinks 0.197        
cufflinks 0.648        
cufflinks 0.284        
cufflinks 0.225        
cufflinks 0.281        
cufflinks 1.827       High
cufflinks 0.114       Low
cufflinks 0.551        
cufflinks 0.874        
cufflinks 2.181       High
cufflinks 0.229        
cufflinks 1.862       High
cufflinks 1.354       High
cufflinks 0.258        
cufflinks 1.928       High
cufflinks 0.16       Low

0 Strain