Gene : Glyma.18G277000 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2770
Name:  ? Glyma.18G277000 Secondary Identifier:  ? PAC:30555820
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G277000 0.5kb upstream 0.5kb upstream 3877 true Chr18: 55891640-55895516 Glycine max
Glyma.18G277000 0.5kb upstream 0.5kb upstream 500 false Chr18: 55895017-55895516 Glycine max
Glyma.18G277000 0.5kb downstream 0.5kb downstream 3877 true Chr18: 55891140-55895016 Glycine max
Glyma.18G277000 0.5kb downstream 0.5kb downstream 500 false Chr18: 55891140-55891639 Glycine max
Glyma.18G277000 1.0kb upstream 1.0kb upstream 4377 true Chr18: 55891640-55896016 Glycine max
Glyma.18G277000 1.0kb upstream 1.0kb upstream 1000 false Chr18: 55895017-55896016 Glycine max
Glyma.18G277000 1.0kb downstream 1.0kb downstream 4377 true Chr18: 55890640-55895016 Glycine max
Glyma.18G277000 1.0kb downstream 1.0kb downstream 1000 false Chr18: 55890640-55891639 Glycine max
Glyma.18G277000 2.0kb upstream 2.0kb upstream 5377 true Chr18: 55891640-55897016 Glycine max
Glyma.18G277000 2.0kb upstream 2.0kb upstream 2000 false Chr18: 55895017-55897016 Glycine max
Glyma.18G277000 2.0kb downstream 2.0kb downstream 5377 true Chr18: 55889640-55895016 Glycine max
Glyma.18G277000 2.0kb downstream 2.0kb downstream 2000 false Chr18: 55889640-55891639 Glycine max
Glyma.18G277000 5.0kb upstream 5.0kb upstream 8377 true Chr18: 55891640-55900016 Glycine max
Glyma.18G277000 5.0kb upstream 5.0kb upstream 5000 false Chr18: 55895017-55900016 Glycine max
Glyma.18G277000 5.0kb downstream 5.0kb downstream 8377 true Chr18: 55886640-55895016 Glycine max
Glyma.18G277000 5.0kb downstream 5.0kb downstream 5000 false Chr18: 55886640-55891639 Glycine max
Glyma.18G277000 10.0kb upstream 10.0kb upstream 13377 true Chr18: 55891640-55905016 Glycine max
Glyma.18G277000 10.0kb upstream 10.0kb upstream 10000 false Chr18: 55895017-55905016 Glycine max
Glyma.18G277000 10.0kb downstream 10.0kb downstream 13377 true Chr18: 55881640-55895016 Glycine max
Glyma.18G277000 10.0kb downstream 10.0kb downstream 10000 false Chr18: 55881640-55891639 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303266 5265 Fabidae View MSA
124063770 5270 Rosid View MSA
123736958 5271 Pentapetalae View MSA
122790433 5272 Eudicot View MSA
122047420 5273 Angiosperm View MSA
121310738 5274 Embryophyte View MSA
123348150 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.406856 0.0 1.45793   High
cufflinks 0.259679 0.0 0.956057    
cufflinks 0.071788 0.0 0.279618 Low Low
cufflinks 0.118765 0.0 0.453416 Low  
cufflinks 0.232772 0.0 0.863054 Low  
cufflinks 0.144218 0.0 0.546174 Low  
cufflinks 0.261024 0.0 0.961972    
cufflinks 0.0886434 0.0 0.342973 Low Low
cufflinks 0.326898 0.0 1.18783    
cufflinks 0.073     Low  
cufflinks 0.077        
cufflinks 0.278        
cufflinks 0.432       High
cufflinks 0.585       High
cufflinks 0.057       Low
cufflinks 0.221        
cufflinks 0.028     Low Low
cufflinks 0.208        
cufflinks 0.316        
cufflinks 0.181        
cufflinks 0.039     Low Low
cufflinks 0.241        
cufflinks 0.325        
cufflinks 0.103        
cufflinks 0.274        
cufflinks 0.126        

0 Strain