Gene : Glyma.18G279200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12780 - RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED Genomic Order:  2792
Name:  ? Glyma.18G279200 Secondary Identifier:  ? PAC:30555012
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G279200 0.5kb upstream 0.5kb upstream 3615 true Chr18: 56029928-56033542 Glycine max
Glyma.18G279200 0.5kb upstream 0.5kb upstream 500 false Chr18: 56029928-56030427 Glycine max
Glyma.18G279200 0.5kb downstream 0.5kb downstream 3615 true Chr18: 56030428-56034042 Glycine max
Glyma.18G279200 0.5kb downstream 0.5kb downstream 500 false Chr18: 56033543-56034042 Glycine max
Glyma.18G279200 1.0kb upstream 1.0kb upstream 4115 true Chr18: 56029428-56033542 Glycine max
Glyma.18G279200 1.0kb upstream 1.0kb upstream 1000 false Chr18: 56029428-56030427 Glycine max
Glyma.18G279200 1.0kb downstream 1.0kb downstream 4115 true Chr18: 56030428-56034542 Glycine max
Glyma.18G279200 1.0kb downstream 1.0kb downstream 1000 false Chr18: 56033543-56034542 Glycine max
Glyma.18G279200 2.0kb upstream 2.0kb upstream 5115 true Chr18: 56028428-56033542 Glycine max
Glyma.18G279200 2.0kb upstream 2.0kb upstream 2000 false Chr18: 56028428-56030427 Glycine max
Glyma.18G279200 2.0kb downstream 2.0kb downstream 5115 true Chr18: 56030428-56035542 Glycine max
Glyma.18G279200 2.0kb downstream 2.0kb downstream 2000 false Chr18: 56033543-56035542 Glycine max
Glyma.18G279200 5.0kb upstream 5.0kb upstream 8115 true Chr18: 56025428-56033542 Glycine max
Glyma.18G279200 5.0kb upstream 5.0kb upstream 5000 false Chr18: 56025428-56030427 Glycine max
Glyma.18G279200 5.0kb downstream 5.0kb downstream 8115 true Chr18: 56030428-56038542 Glycine max
Glyma.18G279200 5.0kb downstream 5.0kb downstream 5000 false Chr18: 56033543-56038542 Glycine max
Glyma.18G279200 10.0kb upstream 10.0kb upstream 13115 true Chr18: 56020428-56033542 Glycine max
Glyma.18G279200 10.0kb upstream 10.0kb upstream 10000 false Chr18: 56020428-56030427 Glycine max
Glyma.18G279200 10.0kb downstream 10.0kb downstream 13115 true Chr18: 56030428-56043542 Glycine max
Glyma.18G279200 10.0kb downstream 10.0kb downstream 10000 false Chr18: 56033543-56043542 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306479 5265 Fabidae View MSA
124066352 5270 Rosid View MSA
123744384 5271 Pentapetalae View MSA
122788690 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.9596 0.0 13.0828   High
cufflinks 2.60258 0.0 9.0206    
cufflinks 2.32599 0.0 10.6942    
cufflinks 2.29731 0.0 8.37154    
cufflinks 1.46944 0.0 7.86983    
cufflinks 0.856172 0.0 3.91424   Low
cufflinks 2.31159 0.0 10.9405    
cufflinks 1.61564 0.0 8.44034    
cufflinks 2.37635 0.0 11.1973    
cufflinks 0.266        
cufflinks 0.481        
cufflinks 0.582        
cufflinks 0.108       Low
cufflinks 0.069     Low Low
cufflinks 0.729        
cufflinks 0.905        
cufflinks 0.077       Low
cufflinks 0.717        
cufflinks 0.641        
cufflinks 1.133       High
cufflinks 0.642        
cufflinks 1.046        
cufflinks 0.739        
cufflinks 0.564        
cufflinks 1.055        
cufflinks 0.212        

0 Strain