Gene : Glyma.01G228100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12548 - TRANSCRIPTION FACTOR DP Genomic Order:  2281
Name:  ? Glyma.01G228100 Secondary Identifier:  ? PAC:30542061
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G228100 0.5kb upstream 0.5kb upstream 7581 true Chr01: 55623071-55630651 Glycine max
Glyma.01G228100 0.5kb upstream 0.5kb upstream 500 false Chr01: 55630152-55630651 Glycine max
Glyma.01G228100 0.5kb downstream 0.5kb downstream 7581 true Chr01: 55622571-55630151 Glycine max
Glyma.01G228100 0.5kb downstream 0.5kb downstream 500 false Chr01: 55622571-55623070 Glycine max
Glyma.01G228100 1.0kb upstream 1.0kb upstream 8081 true Chr01: 55623071-55631151 Glycine max
Glyma.01G228100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 55630152-55631151 Glycine max
Glyma.01G228100 1.0kb downstream 1.0kb downstream 8081 true Chr01: 55622071-55630151 Glycine max
Glyma.01G228100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 55622071-55623070 Glycine max
Glyma.01G228100 2.0kb upstream 2.0kb upstream 9081 true Chr01: 55623071-55632151 Glycine max
Glyma.01G228100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 55630152-55632151 Glycine max
Glyma.01G228100 2.0kb downstream 2.0kb downstream 9081 true Chr01: 55621071-55630151 Glycine max
Glyma.01G228100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 55621071-55623070 Glycine max
Glyma.01G228100 5.0kb upstream 5.0kb upstream 12081 true Chr01: 55623071-55635151 Glycine max
Glyma.01G228100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 55630152-55635151 Glycine max
Glyma.01G228100 5.0kb downstream 5.0kb downstream 12081 true Chr01: 55618071-55630151 Glycine max
Glyma.01G228100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 55618071-55623070 Glycine max
Glyma.01G228100 10.0kb upstream 10.0kb upstream 17081 true Chr01: 55623071-55640151 Glycine max
Glyma.01G228100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 55630152-55640151 Glycine max
Glyma.01G228100 10.0kb downstream 10.0kb downstream 17081 true Chr01: 55613071-55630151 Glycine max
Glyma.01G228100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 55613071-55623070 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308660 5265 Fabidae View MSA
124072361 5270 Rosid View MSA
123751632 5271 Pentapetalae View MSA
122791704 5272 Eudicot View MSA
122050879 5273 Angiosperm View MSA
121349411 5274 Embryophyte View MSA
123427533 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.18803 0.0 12.2328   High
cufflinks 3.25707 0.0 9.82532    
cufflinks 5.47695 0.0 15.4276   High
cufflinks 2.48984 0.0 7.79356    
cufflinks 2.18631 0.0 6.9961   Low
cufflinks 2.74606 0.0 8.49632    
cufflinks 2.85193 0.0 8.78545    
cufflinks 2.95578 0.0 9.03656    
cufflinks 3.0553 0.0 9.30456    
cufflinks 0.853       Low
cufflinks 2.22       High
cufflinks 1.64        
cufflinks 0.811       Low
cufflinks 0.865       Low
cufflinks 1.751        
cufflinks 1.856        
cufflinks 1.148        
cufflinks 1.191        
cufflinks 1.18        
cufflinks 2.153       High
cufflinks 2.131       High
cufflinks 2.0        
cufflinks 1.432        
cufflinks 1.987        
cufflinks 1.941        
cufflinks 1.403        

0 Strain