Gene : Glyma.01G233500 G. max Wm82.a2.v1
Defline:  (1 of 2) PF08378 - Nuclease-related domain (NERD) Genomic Order:  2335
Name:  ? Glyma.01G233500 Secondary Identifier:  ? PAC:30541546
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G233500 0.5kb upstream 0.5kb upstream 4176 true Chr01: 55980133-55984308 Glycine max
Glyma.01G233500 0.5kb upstream 0.5kb upstream 500 false Chr01: 55983809-55984308 Glycine max
Glyma.01G233500 0.5kb downstream 0.5kb downstream 4176 true Chr01: 55979633-55983808 Glycine max
Glyma.01G233500 0.5kb downstream 0.5kb downstream 500 false Chr01: 55979633-55980132 Glycine max
Glyma.01G233500 1.0kb upstream 1.0kb upstream 4676 true Chr01: 55980133-55984808 Glycine max
Glyma.01G233500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 55983809-55984808 Glycine max
Glyma.01G233500 1.0kb downstream 1.0kb downstream 4676 true Chr01: 55979133-55983808 Glycine max
Glyma.01G233500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 55979133-55980132 Glycine max
Glyma.01G233500 2.0kb upstream 2.0kb upstream 5676 true Chr01: 55980133-55985808 Glycine max
Glyma.01G233500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 55983809-55985808 Glycine max
Glyma.01G233500 2.0kb downstream 2.0kb downstream 5676 true Chr01: 55978133-55983808 Glycine max
Glyma.01G233500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 55978133-55980132 Glycine max
Glyma.01G233500 5.0kb upstream 5.0kb upstream 8676 true Chr01: 55980133-55988808 Glycine max
Glyma.01G233500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 55983809-55988808 Glycine max
Glyma.01G233500 5.0kb downstream 5.0kb downstream 8676 true Chr01: 55975133-55983808 Glycine max
Glyma.01G233500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 55975133-55980132 Glycine max
Glyma.01G233500 10.0kb upstream 10.0kb upstream 13676 true Chr01: 55980133-55993808 Glycine max
Glyma.01G233500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 55983809-55993808 Glycine max
Glyma.01G233500 10.0kb downstream 10.0kb downstream 13676 true Chr01: 55970133-55983808 Glycine max
Glyma.01G233500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 55970133-55980132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041014 5273 Angiosperm View MSA
122308976 5265 Fabidae View MSA
124065575 5270 Rosid View MSA
123737845 5271 Pentapetalae View MSA
122786817 5272 Eudicot View MSA
121347889 5274 Embryophyte View MSA
123380667 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.93723 0.0 27.4254    
cufflinks 13.1646 0.0 35.6219    
cufflinks 16.2992 0.0 43.6649    
cufflinks 14.6208 0.0 39.3512    
cufflinks 7.34305 0.0 20.8929   Low
cufflinks 22.5558 0.0 60.176   High
cufflinks 17.2077 0.0 46.1104    
cufflinks 14.2127 0.0 38.2911    
cufflinks 9.82582 0.0 27.1135    
cufflinks 5.113        
cufflinks 2.277       Low
cufflinks 5.772        
cufflinks 4.043        
cufflinks 3.513        
cufflinks 2.284       Low
cufflinks 6.297       High
cufflinks 2.516       Low
cufflinks 5.621        
cufflinks 5.301        
cufflinks 5.844        
cufflinks 2.965        
cufflinks 6.115       High
cufflinks 4.244        
cufflinks 3.009        
cufflinks 6.447       High
cufflinks 3.038        

0 Strain