Gene : Glyma.18G280900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2809
Name:  ? Glyma.18G280900 Secondary Identifier:  ? PAC:30555193
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G280900 0.5kb upstream 0.5kb upstream 2375 true Chr18: 56186948-56189322 Glycine max
Glyma.18G280900 0.5kb upstream 0.5kb upstream 500 false Chr18: 56186948-56187447 Glycine max
Glyma.18G280900 0.5kb downstream 0.5kb downstream 2375 true Chr18: 56187448-56189822 Glycine max
Glyma.18G280900 0.5kb downstream 0.5kb downstream 500 false Chr18: 56189323-56189822 Glycine max
Glyma.18G280900 1.0kb upstream 1.0kb upstream 2875 true Chr18: 56186448-56189322 Glycine max
Glyma.18G280900 1.0kb upstream 1.0kb upstream 1000 false Chr18: 56186448-56187447 Glycine max
Glyma.18G280900 1.0kb downstream 1.0kb downstream 2875 true Chr18: 56187448-56190322 Glycine max
Glyma.18G280900 1.0kb downstream 1.0kb downstream 1000 false Chr18: 56189323-56190322 Glycine max
Glyma.18G280900 2.0kb upstream 2.0kb upstream 3875 true Chr18: 56185448-56189322 Glycine max
Glyma.18G280900 2.0kb upstream 2.0kb upstream 2000 false Chr18: 56185448-56187447 Glycine max
Glyma.18G280900 2.0kb downstream 2.0kb downstream 3875 true Chr18: 56187448-56191322 Glycine max
Glyma.18G280900 2.0kb downstream 2.0kb downstream 2000 false Chr18: 56189323-56191322 Glycine max
Glyma.18G280900 5.0kb upstream 5.0kb upstream 6875 true Chr18: 56182448-56189322 Glycine max
Glyma.18G280900 5.0kb upstream 5.0kb upstream 5000 false Chr18: 56182448-56187447 Glycine max
Glyma.18G280900 5.0kb downstream 5.0kb downstream 6875 true Chr18: 56187448-56194322 Glycine max
Glyma.18G280900 5.0kb downstream 5.0kb downstream 5000 false Chr18: 56189323-56194322 Glycine max
Glyma.18G280900 10.0kb upstream 10.0kb upstream 11875 true Chr18: 56177448-56189322 Glycine max
Glyma.18G280900 10.0kb upstream 10.0kb upstream 10000 false Chr18: 56177448-56187447 Glycine max
Glyma.18G280900 10.0kb downstream 10.0kb downstream 11875 true Chr18: 56187448-56199322 Glycine max
Glyma.18G280900 10.0kb downstream 10.0kb downstream 10000 false Chr18: 56189323-56199322 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.79168 0.0 19.955   Low
cufflinks 10.4791 0.0 29.2035    
cufflinks 6.81232 0.0 19.9074   Low
cufflinks 21.1335 0.0 56.5296 High  
cufflinks 19.8094 0.0 53.128    
cufflinks 7.92871 0.0 22.7964    
cufflinks 14.0991 0.0 38.4354    
cufflinks 27.0168 0.0 72.0832 High High
cufflinks 14.5384 0.0 39.4979    
cufflinks 142.005     High High
cufflinks 4.104        
cufflinks 31.321     High  
cufflinks 33.956     High  
cufflinks 11.02     High  
cufflinks 0.752       Low
cufflinks 9.061     High  
cufflinks 376.819     High High
cufflinks 50.157     High  
cufflinks 13.763     High  
cufflinks 4.408        
cufflinks 14.039     High  
cufflinks 7.634     High  
cufflinks 89.072     High High
cufflinks 10.209     High  
cufflinks 5.118        
cufflinks 59.275     High  

0 Strain