Gene : Glyma.01G179300 G. max Wm82.a2.v1
Defline:  (1 of 10) PTHR10292 - CLATHRIN HEAVY CHAIN Genomic Order:  1793
Name:  ? Glyma.01G179300 Secondary Identifier:  ? PAC:30545169
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G179300 0.5kb upstream 0.5kb upstream 11607 true Chr01: 51518773-51530379 Glycine max
Glyma.01G179300 0.5kb upstream 0.5kb upstream 500 false Chr01: 51518773-51519272 Glycine max
Glyma.01G179300 0.5kb downstream 0.5kb downstream 11607 true Chr01: 51519273-51530879 Glycine max
Glyma.01G179300 0.5kb downstream 0.5kb downstream 500 false Chr01: 51530380-51530879 Glycine max
Glyma.01G179300 1.0kb upstream 1.0kb upstream 12107 true Chr01: 51518273-51530379 Glycine max
Glyma.01G179300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51518273-51519272 Glycine max
Glyma.01G179300 1.0kb downstream 1.0kb downstream 12107 true Chr01: 51519273-51531379 Glycine max
Glyma.01G179300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51530380-51531379 Glycine max
Glyma.01G179300 2.0kb upstream 2.0kb upstream 13107 true Chr01: 51517273-51530379 Glycine max
Glyma.01G179300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51517273-51519272 Glycine max
Glyma.01G179300 2.0kb downstream 2.0kb downstream 13107 true Chr01: 51519273-51532379 Glycine max
Glyma.01G179300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51530380-51532379 Glycine max
Glyma.01G179300 5.0kb upstream 5.0kb upstream 16107 true Chr01: 51514273-51530379 Glycine max
Glyma.01G179300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51514273-51519272 Glycine max
Glyma.01G179300 5.0kb downstream 5.0kb downstream 16107 true Chr01: 51519273-51535379 Glycine max
Glyma.01G179300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51530380-51535379 Glycine max
Glyma.01G179300 10.0kb upstream 10.0kb upstream 21107 true Chr01: 51509273-51530379 Glycine max
Glyma.01G179300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51509273-51519272 Glycine max
Glyma.01G179300 10.0kb downstream 10.0kb downstream 21107 true Chr01: 51519273-51540379 Glycine max
Glyma.01G179300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51530380-51540379 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027117 5273 Angiosperm View MSA
122296343 5265 Fabidae View MSA
124039711 5270 Rosid View MSA
123744166 5271 Pentapetalae View MSA
122788856 5272 Eudicot View MSA
121350817 5274 Embryophyte View MSA
123428843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.716504 0.0 2.29247   Low
cufflinks 7.4764 0.0 20.0778    
cufflinks 1.74179 0.0 4.92412    
cufflinks 4.57454 0.0 12.2154    
cufflinks 6.29699 0.0 16.8237    
cufflinks 6.32676 0.0 16.9106    
cufflinks 7.02455 0.0 18.811    
cufflinks 2.74226 0.0 7.47039    
cufflinks 3.41199 0.0 9.18772    
cufflinks 3.337        
cufflinks 0.734       Low
cufflinks 2.359        
cufflinks 4.84       High
cufflinks 6.276       High
cufflinks 1.549        
cufflinks 3.486        
cufflinks 1.074        
cufflinks 3.97        
cufflinks 6.616       High
cufflinks 1.702        
cufflinks 1.183        
cufflinks 2.155        
cufflinks 3.167        
cufflinks 0.51       Low
cufflinks 2.06        
cufflinks 1.546        

0 Strain